Query= MSMg01no101_m19.b1 MSMg01no101_m19.b1 CHROMAT_FILE:
MSMg01no101_m19.b1 PHD_FILE: MSMg01no101_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:09 2005
(330 letters)
>mm_chr12_3194778_3195507
Length = 730
Score = 559 bits (289), Expect = e-164
Identities = 321/333 (96%), Gaps = 3/333 (0%)
Strand = Plus / Plus
Query: 1 ctttttctcccttctttatattatttttttcttattgaaaccagccttcttctaaagagt 60
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 cttttcctcccttctttatattatttttttcttattgaaaccaaccttcttctaaagagt 260
Query: 61 ttatttgaaagcatttttttcttcttagtctttaaattgagagagaatttattgttttct 120
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ttatctgaaagcatttttttcttcttagactttaaattgagagagaatttattgttttct 320
Query: 121 agttccttctgtgattgactcagtttcatttgactctagaggactggttttcaacctgtg 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttccttctgtgattgcctcagtttcatttgactctagaggactggttttcaacctgtg 380
Query: 181 ggttgcaatcactttgatcacctaagaccattggaaacacagatatttacattatgattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttgcaatcactttgatcacctaagaccattggaaacacagatatttacattatgattt 440
Query: 241 ataacagca---aaattacagttatgatggagcaatcaaaataattttaaggttaggggt 297
||||||| | |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 441 ataacagtagaaaaattacagttatgatggagcaatcaaaatgactttaaggttaggggt 500
Query: 298 taccacctgaggaactgtgttaaataaaggatt 330
|||||||| ||||||||||||||||||||||||
Sbjct: 501 taccacctaaggaactgtgttaaataaaggatt 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_m19.g1 MSMg01no101_m19.g1 CHROMAT_FILE:
MSMg01no101_m19.g1 PHD_FILE: MSMg01no101_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:09 2005
(242 letters)
>mm_chr17_3301893_3302534
Length = 642
Score = 400 bits (207), Expect = e-116
Identities = 234/243 (96%), Gaps = 2/243 (0%)
Strand = Plus / Minus
Query: 1 ttcaaactgacaaagatacttcatccctcaggatgggtatctgcgtctta-ctgttcctg 59
||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct: 442 ttcaaactgacaaagatacttcatccctcaggatgggcatctgcgtcttagc-gttcctg 384
Query: 60 ctgcgcattcatcaagttaagcattgtctgtgtgtctcacgctatggaaatgcttgattt 119
||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct: 383 ctgagcattcatcaagttaagcactgtctgtgtgtcccacgcaatggaaatgcttgattt 324
Query: 120 ggcatcacactcaggtcttcccttctcaggcctcaccagacatctaggaaaaacaaggga 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 323 ggcatcacactcaggtcttcccttctcaggcctcaccagacatctaggaaaaacaaagga 264
Query: 180 tccaacacttgtgcccctcctcttgtgccatctgcagtggtccccaaaaagtggaggctg 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 tccaacacttgtgcccctcctcttgtgccatctgcagtggtccccaaaaggtggaggctg 204
Query: 240 gaa 242
|||
Sbjct: 203 gaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
