BAC Information

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BAC

Clone NameMSMg01-102H05
Chromosome12 (Build37)
Map Location 59,840,339 - 59,840,704
singlet/doubletsinglet
Overlap genenone
Upstream geneSstr1, Clec14a
Downstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102H05.T7 (MSMg01no102_h05.b1)MSMg01-102H05.TJ (MSMg01no102_h05.g1)
ACCAG317590AG317591
length704753
length of high quality
(start - end)
285 (73 - 357)503 (128 - 630)
definitionCHROMAT_FILE: MSMg01no102_h05.b1 PHD_FILE: MSMg01no102_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:03 2005CHROMAT_FILE: MSMg01no102_h05.g1 PHD_FILE: MSMg01no102_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGCGCGGAATT
CAACAACTCTTCAACCAGGAAAGTGAATAGCCCAGTTCAAAAGCAAGAGT
AAACCCTATGACTAAAGTAAAAGGAAATCTGTATAACTGTTGGTGGGAAA
TTAAAGTCATCCAGCCACTGTGAAAATCAGTATGGAGGGTACTCAGAAAA
ACTAAAGTTAGACCTACTATGCGACCCACATACACTACTTCTCATTATTT
TCCCCCAAAGACTCCACCTCAACATATCATAGAAATATTTGCAGGTCAAT
GTTTGCTGCATCATTACTTACAGGAACTAAGTTGAACCAACCTATGTGCC
TGGCAACTGAGGAATGGATGCCAATGTCATATACACAATATACAAGATTA
ACATTTAGATCAGTGGCTGGAATGAAACTAATCCTATTCCTTAGCATGGC
TGGACATTTTCCAATCAGGAACAGGAAGTAATGGCATAAAAATCTTGCCT
CTTCTCCGAGTAGGATAGAATTCTTTCATGCCTGCCTCTCCAACACAACA
TTAATATTTTCTTGATTCCACCCTCACCCTTAGCCATCTTTTCTTCTCGC
TTCTGCACGTTTGTGCTTCTTTCCATTTAACCCTCTCACCCCTGAGTGAT
CAGCTTCCCACTTTCTTTTGCCCATTTCAGAATTTGCCGTACTTCTTTAA
TTAC
NNNNNNNNNNNNNNNNNNNNNCCCCCCCAGGCCCCCCNNNCCCCNCTGAC
GANNNTCCCTAGGCTATGGGTAGGCCTGGAGGCCGCCGGTCCAAAAAATG
TAGGTGACCTATAGATTTACTCGCGGAATTCTTGGGCAAATGGAGTCCTA
TTCATGAAAGAAGCAGAGGCAACTAACAAACGCTGAGAGTGGGAGGAATA
GTTTTCCGCAGGAAAGGACACACCAATTTGTTATCCAGTACCAAGTGGTT
ATCACTGAAAACACACATACAGTTAACCCTGTAGAGATTGGGTAGATCTT
ATTTAGAAATAAATATCTATTCCTATGTGTGTATGCTTGTAACAATAAAG
GAAAAGAGAGGGCATGGCTTTGAAAGAGAACAATTTGAAAAAGGGCTATT
GTGGGAGGGTTTGGAAGAGGAAAGTGACGGGAAAACCGGTACAATTATAA
TCTCAAAAATAAAAAAAAAAATTAAAAAATAGCAATTGTGAGAAGCTGTC
CAGGTTTTCACAGTGGTCAGAAAAAAGTTGCAAGGCATTGAGCTGTTTAT
TAAGTTCTTCAGTCTGTCTCATTAGTTCTTTGAGTAACTCCAACTACTAT
CTTGATTCATCCCGGAGGAGGGCAAGATGACATGGATGCTGGTTTTCTTT
TTTCCTTGTTGCCAATCTGCATTTAAGATTCCTTGACTTCTTCTCAGGGA
TTCCATTTGAAGCCTCTGTTGTTTACAGTTCACAGGGAATACTTGTTAAG
TGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_h05.g1 MSMg01no102_h05.g1 CHROMAT_FILE:
MSMg01no102_h05.g1 PHD_FILE: MSMg01no102_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:03 2005
         (503 letters)



>mm_chr12_59839801_59840704
          Length = 904

 Score =  638 bits (330), Expect = 0.0
 Identities = 358/368 (97%), Gaps = 2/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 73  agttttccgcaggaaaggacacaccaatttgttatccagtaccaagtggttatcactgaa 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 agttttccgcaggaaaggacacaccaatttgttatccagtaccaagtggttatcactgaa 845

                                                                       
Query: 133 aacacacatacagttaaccctgtagagattgggtagatcttatttagaaataaatatcta 192
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 aacacacatacaattaaccctgtagagattgggtagatcttatttagaaataaatatcta 785

                                                                       
Query: 193 ttcctatgtgtgtatgcttgtaacaataaaggaaaagagagggcatggctttgaaagaga 252
           ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||
Sbjct: 784 ttcctatgtgtgtatgcttgtaacaattaagaaaaagagagggtatggctttgaaagaga 725

                                                                       
Query: 253 acaatttgaaaaagggctattgtgggagggtttggaagaggaaagtgacgggaaaaccgg 312
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 724 acaatttgaaaaaggggtattgtgggagggtttggaagaggaaagtgacgggaaaactgg 665

                                                                       
Query: 313 tacaattataatctcaaaaataaaaaaaaaaattaaaaaatagcaattgtgagaagctgt 372
           |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||
Sbjct: 664 tacaattataatctcaaaaat--aaaaaaaatttaaaaaatagcaattgtgagaagctgt 607

                                                                       
Query: 373 ccaggttttcacagtggtcagaaaaaagttgcaaggcattgagctgtttattaagttctt 432
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tcaggttttcacagtggtcagaaaaaagttgcaaggcattgagctgtttattaagttctt 547

                   
Query: 433 cagtctgt 440
           ||||||||
Sbjct: 546 cagtctgt 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space:   440742
Effective search space used:   440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)