BAC Information

Click to search

BAC

Clone NameMSMg01-102K24
Chromosome12 (Build37)
Map Location 85,002,849 - 85,003,061
singlet/doubletsinglet
Overlap geneRbm25
Upstream geneRgs6, Dpf3, Wdr21, Zfyve1, LOC626950
Downstream genePsen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102K24.T7 (MSMg01no102_k24.b1)MSMg01-102K24.TJ (MSMg01no102_k24.g1)
ACCAG317764AG317765
length688686
length of high quality
(start - end)
377 (136 - 512)213 (75 - 287)
definitionCHROMAT_FILE: MSMg01no102_k24.b1 PHD_FILE: MSMg01no102_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:21 2005CHROMAT_FILE: MSMg01no102_k24.g1 PHD_FILE: MSMg01no102_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAAATGGGCGG
AATTCTTACTACTGTACCTCTCAATGTACTTACCTACCAGGTCATGTCGC
AGGCTGAATCTCATCAACCTTGGCCGCAAAATAACAAGGAAGTGCTGCTA
ACTCCTGGGTCCTCAGAATATGTCTAAATCTGGATATGGGGGCCTTTATT
TATTTATTCATTTATTATTTAATTTTGATTTTACAAGGTAGAATTTCTCT
ATGTAGCCTTGGCTGTCCTGGAACTCCCTCTGTAGACCAGGCTGGTCTTG
AACTCAGAGATCTGCCTGCCTCTGCCTCCCAAGGGCTTGGATTAAAGGCG
TGTACTGCCACCACCTCACTGTATATAAGGTATAAAGATGTACAAATTCC
AGTGAACTTTAGCTCAATTTAATCAGCGTCCTTTTAACTTTTATTATTTT
ACCATTATTTTATTCTTTATTAATATTTATTCTATTATTTTCTTATTTAT
TTTATTTATGTTCTATTAACTCCAAATTTATATTGTACTTTTATTACTTT
TATTCTTGGAGAGAGAGACTCATGTAGTCCATGCTAGTCTCCCAACCCAT
TCTGTAAGCAAGCCTTGCCCCTGAAATTCTGATTCGCCTGCCTCCATCCC
CAGAACATATTCGTCCTATTTCGTGATCTGCGCATCCG
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAATATCCCCTTAACCACACCACCCAA
AGAGAACTGGTTTTTTTGTTTTCCTTTCTTTTATTTCTAAATCACATTTT
GGAAATTCAGAACATTGCCATCAGTAAAATAAAAGGCAGTGAAATGCCTG
ACAAACCCCTAAAATGCTGAAGTAGTAGCTTGCGAATTAAAAATTTTTAC
CAACCTGATTTCCTCATAATTCACCAATAACATGACAGGGATTACAACAC
ATACATAAAAACAGAACGCGCTTTATTCCACACACACAACTGTATACCCT
TTGAAAGCTTACTCTTCCTTTAATTGGAAGAGTGAACATACATAAGATTA
TTCTACTATGACTTGCCACAGACCACCATTGTAACTCTCAAAACTGTGGG
AGTCACATTTGCGCTTCCAGACACCTCTACTTCCTGAAAAAGCACTCTAT
GTGACCTATGACTGGGTATCTGGACATTAAGTGTTCAACAGCACTGATAA
TCATCATTAATTGTAACTTGGTATTTTGAAAGCAGTACGAAAAAATACCA
TTCACACACCGACAAAGTGAACACTTATCCCCTTTGAGTCATGTTACGCC
CTTTCCCACTTTTACCACAACCAACGCCCTCCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_k24.g1 MSMg01no102_k24.g1 CHROMAT_FILE:
MSMg01no102_k24.g1 PHD_FILE: MSMg01no102_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:21 2005
         (213 letters)



>mm_chr12_85002649_85003261
          Length = 613

 Score =  389 bits (201), Expect = e-113
 Identities = 210/213 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatccccttaaccacaccacccaaagagaactggtttttttgttttcctttcttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 413 aatatccccttaaccacaccacccaaagagaactggtttttttgttttgatttcttttat 354

                                                                       
Query: 61  ttctaaatcacattttggaaattcagaacattgccatcagtaaaataaaaggcagtgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttctaaatcacattttggaaattcagaacattgccatcagtaaaataaaaggcagtgaaa 294

                                                                       
Query: 121 tgcctgacaaacccctaaaatgctgaagtagtagcttgcgaattaaaaatttttaccaac 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 293 tgcctgacaaacccctaaaatgctgaagtagtagcttgtgaattaaaaatttttaccaac 234

                                            
Query: 181 ctgatttcctcataattcaccaataacatgaca 213
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ctgatttcctcataattcaccaataacatgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)