Query= MSMg01no102_l05.b1 MSMg01no102_l05.b1 CHROMAT_FILE:
MSMg01no102_l05.b1 PHD_FILE: MSMg01no102_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:22 2005
(268 letters)
>mm_chr12_83000039_83000706
Length = 668
Score = 426 bits (220), Expect = e-123
Identities = 250/260 (96%)
Strand = Plus / Minus
Query: 4 ggaattccattcctagcacagaaaatacggtggctgctaccaaaaagagtcagttaagct 63
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 416 ggaattccattcctagcagagaaaatacagtggctgctaccaaaaagagtcagttaagct 357
Query: 64 acaccggagggaaactaagtctgagcccttacatgacactatggactaaaataactgaga 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acaccggagggaaactaagtctgagcccttacatgacactatggactaaaataactgagg 297
Query: 124 taacaaaactaaaataaagtgttaaaaatacagaagaatatcagatctctgtacagggag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 taacaaaactaaaataaagtgttaaaaatacagaagaatatcagatctctgtacagggag 237
Query: 184 tacttctgcaagacccaggaatggcagttactagacgatgatggtgatggtgatgatgat 243
|||||||| |||||||||| ||||||||||||||| ||||||| |||||||| || ||||
Sbjct: 236 tacttctggaagacccagggatggcagttactagatgatgatgatgatggtggtggtgat 177
Query: 244 ggtgatggtgatgatgatga 263
| ||||||||||||||||||
Sbjct: 176 gatgatggtgatgatgatga 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no102_l05.g1 MSMg01no102_l05.g1 CHROMAT_FILE:
MSMg01no102_l05.g1 PHD_FILE: MSMg01no102_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:22 2005
(524 letters)
>mm_chr12_82944074_82945002
Length = 929
Score = 982 bits (508), Expect = 0.0
Identities = 521/528 (98%), Gaps = 5/528 (0%)
Strand = Plus / Plus
Query: 1 ctcaccaaaggcatcattagcaaaacccctatgctagtaagttctaaatagaggcatgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcaccaaaggcatcattagcaaaacccctatgctagtaagttctaaatagaggcatgat 260
Query: 61 tgtagggtagtaaacgagactaggaacaaaataagatggtttgtgtgaatgatctgtagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagggtagtaaacgagactaggaacaaaataagatggtttgtgtgaatgatctgtagg 320
Query: 121 aacctctatgatttaaaaaaaaaa-----caagcttaactttgggagtacttgaaaatga 175
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 aacctctatgatttaaaaaaaaaaaaaaacaagcttaactttgggagtacttgaaaatga 380
Query: 176 tactaaatggaggaaacagtagggtattcattctagaaggagcagatgagctcatttgtg 235
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactaaatggcggaaacagtagggtattcattctagaaggagcagatgagctcatttgtg 440
Query: 236 aatatgggcctgtgtgtctgctgcttctctaacatcaaggggagtaattttcaaaatctc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatatgggcctgtgtgtctgctgcttctctaacatcaaggggagtaattttcaaaatctc 500
Query: 296 ggaatgaaagctcaggtggacggcagaatggaaaggactcagagacctgccagaaaccag 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaatgaaagctcaggtggacggcagaatggaaaggactcagagacctgccagaaaccag 560
Query: 356 gagcaaggcaggcattcccagaaggtcttggcagacagaggagcaggctagctccccgtg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcaaggcaggcattcccagaaggtcttggcagacagaggagcaggctagctccccgtg 620
Query: 416 ccagccagagtgagagatgaactgtactgggtggagcccagttggcccgtgctgaggtct 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagccagagtgagagatgaactgtactgggtggagcccagttggcccgtgctgaggtct 680
Query: 476 gcgtagcactgaaatccacattggctgctctgggggtggggtcgggtg 523
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 gcgtagcactgaaatccacattggctgctctgggggtggggtcaggtg 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 929
Length adjustment: 10
Effective length of query: 514
Effective length of database: 919
Effective search space: 472366
Effective search space used: 472366
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
