BAC Information

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BAC

Clone NameMSMg01-102L10
Chromosome12 (Build37)
Map Location 47,045,924 - 47,046,167
singlet/doubletsinglet
Overlap genenone
Upstream geneStxbp6
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102L10.T7 (MSMg01no102_l10.b1)MSMg01-102L10.TJ (MSMg01no102_l10.g1)
ACCAG317782AG317783
length685798
length of high quality
(start - end)
244 (45 - 288)189 (77 - 265)
definitionCHROMAT_FILE: MSMg01no102_l10.b1 PHD_FILE: MSMg01no102_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:23 2005CHROMAT_FILE: MSMg01no102_l10.g1 PHD_FILE: MSMg01no102_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCTTTCCAGAGAGATCCGCGGAATTCTCTCATTCCCAAACAGAATATC
ATAGATATAGAAAGGGCAGTGAAAAAGTTTAAAACCAATTTGTTATGAGG
ATCATTTGCTATAAATGTGATTAAAATTATTCTGTTTGACAGTCAGGCAT
TGGTTGTTAGATGTAGCTGGTCTTTGTGCAATGGCTAGAAGAATACCATT
CCTGTATAAATTTTGTAGAAAAATAATAGCAACATGTGAGAGGAAAATAA
ATAGAGATATACTCTCTCCACTCTGACACCCCTGCAACCATTATGAGGTC
ATCTTCTCAGTTCTGCTTTGTGCCTCATAGTCTCTCTCTGCGCCACTGCC
TTCAGAACACATGTCTCATAAATCATTCAGGTGAGAGGCATTAATCATAA
TAAGCCATAAGACCAAGTGAAATTCTGAAGAAGGCCCTGGGACATTACTT
TTCAGATAATGTCTACTGTCTTTGATGTGTCTTGTGTCGCCTGGACAGTT
TCCTGGTTACAGACTGTTACAAACTTTCATATCTCTATTTCCTGATTTCC
CTGGGCTTTTTGACTGCCATCTGTCATATAGGCCTATGACTTGACCCAGA
AATCATCTACCTTTTCTCTCTACCCTAACATTCAAAAAACAATTGACCTC
CCCTTGATGTAGTCTTAGAGGAGTTTATTTTATAG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGAAATTCTAAAAAGTCTTTCAATGATTCTTTCAA
GCTTCCCTCTAATGTGCATACATGCATACATTCACACACACACACACACA
CACAAAACCACACACACACATAAAACCACACACACACACACAGGGAGAGA
GGGAGGGGGAAAGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATAAGAAGAAGAAGAA
GAAGAAGAAGAACAAGAAGAAGATTTTTTTTTGTTAGGAGGGGGAGGAGG
AGGAGGTATCATCCTTTTTTTTTCCCCCCCCCCCGCCCCCCGCTGGTTGG
CGCGTGGTAGCTTGTTCTGTCGCGTCTTCGCATACAAAAAAAATATTTCT
TTTTTGTGTGCGTGTGTTATCTCTTCTCTTCCTTTTCTCCCTGTCTGTTT
CGCTTCTTTTACCTTTTCCCTCTATTCGTCCCTCTGTTCCTGATCTCTTT
CTTTCCCCACTTACCTTCCATCTCTAGATTTATTACTTTGATCCTCTTCC
TAATACAGGAAGTTCACCAAGTTTATAGTTTTTTGTATAACTGCCGCTTC
TCTCGTCATTATCCATCATTTCATAGAGAATGCGCCTGTTTCGTCTACTG
CTCTGTCTGTTACGTTTACATTCGTAAACAATACCCTTCCAACCATCTTT
CGCTCCTCCCCCAAATCGTCTACTTCCGCCCCTTCCTTCCATTTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_l10.b1 MSMg01no102_l10.b1 CHROMAT_FILE:
MSMg01no102_l10.b1 PHD_FILE: MSMg01no102_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:23 2005
         (244 letters)



>mm_chr12_47045724_47046367
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatcatagatatagaaagggcagtgaaaaagtttaaaaccaatttgttatgaggatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatcatagatatagaaagggcagtgaaaaagtttaaaaccaatttgttatgaggatca 260

                                                                       
Query: 61  tttgctataaatgtgattaaaattattctgtttgacagtcaggcattggttgttagatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgctataaatgtgattaaaattattctgtttgacagtcaggcattggttgttagatgt 320

                                                                       
Query: 121 agctggtctttgtgcaatggctagaagaataccattcctgtataaattttgtagaaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctggtctttgtgcaatggctagaagaataccattcctgtataaattttgtagaaaaat 380

                                                                       
Query: 181 aatagcaacatgtgagaggaaaataaatagagatatactctctccactctgacacccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatagcaacatgtgagaggaaaataaatagagatatactctctccactctgacacccctg 440

               
Query: 241 caac 244
           ||||
Sbjct: 441 caac 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)