BAC Information

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BAC

Clone NameMSMg01-102M10
Chromosome12 (Build37)
Map Location 95,051,277 - 95,051,481
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102M10.T7 (MSMg01no102_m10.b1)MSMg01-102M10.TJ (MSMg01no102_m10.g1)
ACCAG317829AG317830
length694705
length of high quality
(start - end)
209 (76 - 284)---
definitionCHROMAT_FILE: MSMg01no102_m10.b1 PHD_FILE: MSMg01no102_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:28 2005CHROMAT_FILE: MSMg01no102_m10.g1 PHD_FILE: MSMg01no102_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATTATTTGCGGCGCTATACGACTCCTATTTCAAGAAGAGGGGCGGAATT
CATTCTCTATCCGAAATTGAGTGTACAATGACATATTCCTTTACCCCAAA
TTTGAGTCAAGAAGACCCCTTAATATTTTATGTATGCTAAATTTGATATA
ACAGAAGACAGCAGTCTCTCATAGTTGCCAGAGTGAAACGAACTGGAAAG
CAATAATCTGGGATGGAAATTGCAGAGAAGTATATTTTCAGAAACATTTC
TTATTCTTTTCTACAACTATATTCTTTTTAGCTTCTAAATAAAAAACTAA
GTCCTCTTTAGCTGCCATTTTGCCTGAATGCAGTTAGAGTGTAAGCTAAC
AGCCTCTTAAATAACATCCTCTTAGCTTTCCAGTCACACCATTCCAATTC
TGTATTTTGTCAGTAAAAGTCCTGTTTTTACAAATAATACTTTGGCCATC
TGCTTGCACATATGTGCTTATCATTACTGAGTGTCAGATTCTCTCCCAGT
TTTATAGATGGTACCATAACCCTTGAATGTGCCTTTTCCCTTAAATAGCA
TTTTTAAACCTACTTAAATTGATCCCCGGTATACCGCCTCCTTTTGATGT
GTTTTTTTTATTGTCCTCCCCCCACTTTGCTGGATATCTGATTTTGTACG
TTGTACTATCTTATACATTCCCTAGTTTTCTTTCATCTCTTTCC
AATGATGTGAGAGGCCTGGCGACCGCCTGGTTTCAAACATAGGAGXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXGNAACTAGAGTGAGGATCTTAAG
CCCACACCCACAGTGACACTCCTCACTCCACCAGGTCACACCTATTCCAA
CAAGGCCACTCCTCCAAATGGTGCCACTCCCTGGTCCAAGAATATACAAA
CCATTACTGCATTACATTAAAGTCTATGCATACTACAGCAAAAGTCTTAG
ATATTATCAAGTATCTAAGCCTCTCTAATGAGTGTATTAACAGAAGGGAT
CAAGTCTAACCCACGATTTATTGTTTTTTATTTCTCAACCTGCCTATAAA
CTTCCGTAAAATAATTATGCAGACCTAATTAAGACTTTATATTGCATTAC
TCTTTGCCAAACTTTAACCTGAGACTCCCGTCTTGGGTCGTAATGATGGG
ATAAATACCACTACTGACTATTTCCATCATCCTGTCATACCAGAACATAT
ACTTCACACACTTGCTACCTATATGACATACCCATAACTCCAAGCACCCC
CAACTATGACCATATACATTTCTTATGATCCTATACAGATCACTATAACT
ACAATTTATGCCCTGATCTCTTCATCCCTTTTTATCCTCATGATCCTTTT
TTCTCGTCTTTACCCCTTTCACCTTCTCTTCCTCCCCCCCTTCTCCCTTC
CCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_m10.b1 MSMg01no102_m10.b1 CHROMAT_FILE:
MSMg01no102_m10.b1 PHD_FILE: MSMg01no102_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:28 2005
         (209 letters)



>mm_chr12_95051077_95051684
          Length = 608

 Score =  325 bits (168), Expect = 1e-93
 Identities = 197/210 (93%), Gaps = 9/210 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgacatattcctttaccccaaatttgagtcaagaagacccc----ttaatattttat 56
           |||||||||| |||||||||||||||||||||||||||||   |    ||||||||||||
Sbjct: 201 caatgacatagtcctttaccccaaatttgagtcaagaaga---caaagttaatattttat 257

                                                                       
Query: 57  gtatgctaaatttgatataacagaagacagcagtctctcatagttgccagagtgaaacga 116
           || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 258 gtctgctaaatttgatataacagaagacagcagtctctcacagttgccagagtgaaa-ga 316

                                                                       
Query: 117 actggaaagcaataatctgggatggaaattgcagagaagtatattttcagaaacatttct 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 317 actggaaagcaataatctgggatggaaattgcagagaagtatattttcagaaacatt-ct 375

                                         
Query: 177 tattcttttctacaactatattctttttag 206
            |||||||||||||||||||||||||||||
Sbjct: 376 cattcttttctacaactatattctttttag 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 608
Length adjustment: 9
Effective length of query: 200
Effective length of database: 599
Effective search space:   119800
Effective search space used:   119800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)