BAC Information

Click to search

BAC

Clone NameMSMg01-103B20
Chromosome12 (Build37)
Map Location 112,949,556 - 112,949,672
singlet/doubletsinglet
Overlap geneBag5
Upstream geneWdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik
Downstream gene2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103B20.T7 (MSMg01no103_b20.b1)MSMg01-103B20.TJ (MSMg01no103_b20.g1)
ACCAG318069AG318070
length734713
length of high quality
(start - end)
117 (154 - 270)200 (75 - 274)
definitionCHROMAT_FILE: MSMg01no103_b20.b1 PHD_FILE: MSMg01no103_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:55 2005CHROMAT_FILE: MSMg01no103_b20.g1 PHD_FILE: MSMg01no103_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATGAATCATTCACATCTATAATTGCGGCGCTAATACGACTCCTATATT
TCGNAAATGCGCGGAATTCCAGCTTGGATACCCGAAGAAAAATATCTCCA
CAGCCCGAATGAGCCCTTTTAACAAGTGTACTAACAAGGAGTGTTTACAG
TGGGTTCTTGTCCTGCAGAGACTAATACGTTATCATTCTTGCTATCTTTC
AGTGCTTGTGAAACTGAACACAGAAGTATGGATATGGCAAACCAACACCC
CTCCATTAGTAGGCTTCAGGAGATCTAGCGGGAAGCAAAGGCTATAGAGC
CGCAAGTGGCTCGGCTCCTGTGGCCTGTCGGATGATCATTTTTATCTACA
GGTTGCAGAGGATCCTGACCACAACAACTTTTTGAAATTGCCTCCGCGCA
TACGAAAAGAAAATCACATATCCAGCATGTTTTTACCCCCCCGGTATAGG
AGACAGAATGTCCCCTCACGGAGTTGCACCTGAATGTCAATCTCCCCCCC
CCGTATCGAACCCCACACTATTCTTAACCGAGTCTCTTGCTCTCGTGCAA
GAATTCATTGTGACCTCTTTCCGAGTATATCTCTCGTGTTCCTCACGCCC
TTTATCATTTAAACCAGCGACATAGTTATTGAAGTTGAACTACCCTATTT
ATTTCCCCTGCATACCTTCCTTGTATAACCGCCCTTCTTCATTCGCTTCC
CCTACCTGTTGCTGTTCACTTCTTTTTTTTCTTA
TCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCCCCAATCACTTTTGGTCATTTAGGGATCAATG
CCTTTCACTATTGCCATAGTTTTTATGCTGTTACACAACCCCATACGGTT
GCAAAACCCGCAGTTTAAGAAGCTGTGATTTAGGGCACCAGCCCTCAAGG
CAGCCAAGGCTTCTGCACTCACCAGATAACGCTCACTCCCTTCTGGCATC
TCTGACACCTTGTCTTCTCTGTGCGCACTTAGCTATACGCTGGTGTGCCA
TAACAACCAACGCTCGTGTCCTGTAGCTCTTCCTCCAGCACGAGCCAGTG
ATTGAAGTGACTGTGTGTAGCCTTCAGAGCTGAGACCCAAATGTTATATT
GGCTGTGGAGCAGCTGACCCACCAGGGGGCTCCTCAAAGCGGCTCTACCT
AAGTGCCCACAATGTCTGACTGTTCAGAATCGCATACTTCTAGTCCATGA
CGAGCTGGTTTCAAAACTCAGGCGATCAATTCCAACTAATGAGACTCAGA
TTACCCTATGTCCAATCAACCCTCTAGTCAATTCCCCCATTTACCCCTGC
TGTCCCTCATTTTTGTCTGCTATTCCGTGTTCTTATATGCTCATCCTATG
TCCAAGGTATTTCCCACACCCCCATTGTCCCCCCGCTTAACATTTTGCCC
GTTATCCGTTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_b20.b1 MSMg01no103_b20.b1 CHROMAT_FILE:
MSMg01no103_b20.b1 PHD_FILE: MSMg01no103_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:55 2005
         (117 letters)



>mm_chr12_112949356_112949872
          Length = 517

 Score =  219 bits (113), Expect = 6e-62
 Identities = 116/117 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcttgtcctgcagagactaatacgttatcattcttgctatctttcagtgcttgtgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gttcttgtcctgcagagactaatacgttatcattcttgctatctttcagtgcttgtgaaa 258

                                                                    
Query: 61  ctgaacacagaagtatggatatggcaaaccaacacccctccattagtaggcttcagg 117
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 257 ctgaacacagaagtatggatatgggaaaccaacacccctccattagtaggcttcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)