BAC Information

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BAC

Clone NameMSMg01-103K06
Chromosome12 (Build37)
Map Location 37,851,495 - 38,023,263
singlet/doubletdoublet
Overlap geneMeox2, A530016O06Rik
Upstream geneBzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneLOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103K06.T7 (MSMg01no103_k06.b1)MSMg01-103K06.TJ (MSMg01no103_k06.g1)
ACCAG318457AG318458
length713713
length of high quality
(start - end)
153 (122 - 274)238 (79 - 316)
definitionCHROMAT_FILE: MSMg01no103_k06.b1 PHD_FILE: MSMg01no103_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:37 2005CHROMAT_FILE: MSMg01no103_k06.g1 PHD_FILE: MSMg01no103_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,851,495 - 37,851,647)(38,023,026 - 38,023,263)
sequence
TTCAAAATTTGCGTGCGTAAACGACTACTAATCCGACCGGAGGCGNGGAA
TCCTAATTTTCCTGAAACAGCCGAAATGCTGAGCTAGAGAGGACCCACTC
TACATAGTAGTCACATGCCGATTGTTATTGAGGTGCTTCCTCAGAAAAGA
GTTCTGTTGTTCTCTGGACACACATAAGTATCTCCTCACATTTTTCTCTA
TTTCTTCAGATATTTTGAACTTTCTTCTTTTATATTTTATAATAGAATCT
CTTCATTTTGAATCAGCTTTAGAACTTAGGGAGTGCCATTAGCACTTGTT
GATCAAAGACGTTTTCATTATTTTCCCAATGAAGCGAAGGTTATTTTGAG
GATTGTTTTTTCCTCACCCCTCCCCCCAGATTACAAATATAACATCAATA
GTTACCTTTTTTCCCCACTAAATAAATTTTTTATGGCCCGTCATCTCTGC
ATTTCATCTCTTCCGTTACTCTCTTCCTCCTATCCCTTCTTTCCATCCCC
CCTATACCTCATCCCCCATATTTTCCCCACTCCCTTTTTCCTTCCTATCC
TTATTCCTTTTCTATCCTCTTCCTTTTTTTTTTTAATACCCCCCCTATTT
TCCTTTTTTATTCTCACCCCCCCTGCTACCTTCCTTAATTACCCTCTCCC
TTTTATTAAATTCTTTTTAAACCCTTCCCCTCTCTCTCATTTTCCCATTT
CCCCCTTTTCTCG
NCCACTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTACAGAGCAGGCTGGACA
TGGATTCAGAGACCTGCTTGACTCTGCCTCCTGAGAGATGGGATAAAGAT
GCAGACCAACATGCTGAGTTTGAAAAAGAGTTTCTCAGCCAATATGATTA
TTTTTTGTTGTTTTGTTTCTTCAACAACTTCCAGGTTTCCTCTGGAGCAC
TCGCTCCCTCTCAGACTCTTTAAACATAGTCGTAAATCACATTTTACTTG
GGTAGACGAAGAAAAGATGGGGATTTTTAAAAATTCATTGTATTCATCAT
TCCTAAACTCCTTCTAGCTCATCATAACGCTTTAAAATAAACTTATTCTA
TGCTCCTACTGGAAAACAACCACAAGATAAAAAACAATAATCCATCACAA
TATATAATCAAAATAAAATAGAAACTATATAAGTGCACAAAAACAAAATC
ATTGAAACTATAAACTATAGCTAGGTACACAGTATCAGTGAGAGAAGAAT
AATGAGATGTAAACTTAAGCACCCTCACATAAGCCTTGCAATCGAGCATT
GCATCTTTCGGCGCAAGGATGTTAAATTTGTGGGATAAATTACTGTATTA
AACAACTTTCCATGAGGTATATTATAGCCGAAATGAACACTCTTACCCCT
CCCGCTTTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_k06.b1 MSMg01no103_k06.b1 CHROMAT_FILE:
MSMg01no103_k06.b1 PHD_FILE: MSMg01no103_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:37 2005
         (153 letters)



>mm_chr12_37851295_37851847
          Length = 553

 Score =  257 bits (133), Expect = 2e-73
 Identities = 148/153 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttattgaggtgcttcctcagaaaagagttctgttgttctctggacacacataagtat 60
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttattgaggggtttcctcagaaaagagttctgttgttctctggacacacataagtat 260

                                                                       
Query: 61  ctcctcacatttttctctatttcttcagatattttgaactttcttcttttatattttata 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctcacacttttctctatttcttcagatattttgaactttcttcttttatattttata 320

                                            
Query: 121 atagaatctcttcattttgaatcagctttagaa 153
           |||||| | ||||||||||||||||||||||||
Sbjct: 321 atagaaacacttcattttgaatcagctttagaa 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no103_k06.g1 MSMg01no103_k06.g1 CHROMAT_FILE:
MSMg01no103_k06.g1 PHD_FILE: MSMg01no103_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:37 2005
         (238 letters)



>mm_chr12_38022732_38023369
          Length = 638

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctacagagcaggctggacatggattcagagacctgcttgactctgcctcctgagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 actctacagagcaggctggacatggattcagagacctgcttgactctgcctcctgagaga 473

                                                                       
Query: 61  tgggataaagatgcagaccaacatgctgagtttgaaaaagagtttctcagccaatatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tgggataaagatgcagaccaacatgctgagtttgaaaaagagtttctcagccaatatgat 413

                                                                       
Query: 121 tattttttgttgttttgtttcttcaacaacttccaggtttcctctggagcactcgctccc 180
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 412 tattttttgttgttttgtttcctcaacaacttccaggtttcctctggagcactcactccc 353

                                                                     
Query: 181 tctcagactctttaaacatagtcgtaaatcacattttacttgggtagacgaagaaaag 238
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 352 tctcagactctttaaacatagttgtaaatcacattttacttgggtagatgaagaaaag 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)