BAC Information

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BAC

Clone NameMSMg01-103N12
Chromosome12 (Build37)
Map Location 42,160,546 - 42,263,024
singlet/doubletdoublet
Overlap geneLrrn3
Upstream geneZfp277, Dock4, LOC638487, LOC100043157, LOC100043162
Downstream geneImmp2l, EG638533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103N12.T7 (MSMg01no103_n12.b1)MSMg01-103N12.TJ (MSMg01no103_n12.g1)
ACCAG318612AG318613
length733697
length of high quality
(start - end)
192 (91 - 282)132 (128 - 259)
definitionCHROMAT_FILE: MSMg01no103_n12.b1 PHD_FILE: MSMg01no103_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:53 2005CHROMAT_FILE: MSMg01no103_n12.g1 PHD_FILE: MSMg01no103_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,160,546 - 42,160,732)(42,262,893 - 42,263,024)
sequence
CCTTCCATATTTCCTTATCTATAATTGCGGTCGGAGTACGACTCTTATTC
CGAGAGGAGGCGCGGAATTATATTTGTTCCCTCAAGTGCAACTGATATCC
AGGTCCTAGAAGATAATAACAAATGATCCCAGAAGTCTATGTTCTCAGGG
GCTGAGCTGGTAATTAGTTCTTCAAATTTACAAACAAGAGAATTTAAGTA
AACACAAGTAATACGATATAAGCTTTACAACGAAGGGATAGTATATGTAT
TAAAAACATCATGTGACTTGAGTTCTAGACAGATTTTAACATAAATGTAG
TTAACACAAGCTCTGGTGTTCCTGTCTCTATTTTATTTTATGAACTGGCA
ATAACTTAGATTTTTATTACACATGATGAATTTATTACATTTTACCTATA
TTTATATATTCTCTCCTGTCTCTGTGTGTGTGCATGTGCGTGTGCGTGTG
TGCGTGTGTGTGTGTGTGCGTGTGTGTCTGCGTGCCACGGGTATTATGCC
TTTCCGTTTTATTCCGCTAGCCTCCTATTCACTTTCCCCGTTTCATTCTC
TTTCTCTCTCCGTTACTTACCTCATCGTCTTCCCCTCCCCATCTATTCTA
GTTATTATCACCCGCTCTTTAATTCTTATTACCTCCACCCCTTTTTATAC
CCTTAATTACGTTTCGCTCTTTGTCCCCACGATCACCTTTCCTTTTCCAA
CCCCTTTCACCTTTCTTCTTCTTTGTTCCTCTT
NCTCCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTACGAGAAAGGGGGGAGAGTGGT
TTACTACGAGAGTGATGACAGGAACCAAAGGGAGCCCTTGGACAGGAATG
CAGGCAGCCAGGGAGGCCAGAGGGGAAAGGGGCTAACTCTCTGGTAGAGA
TCCCAAAGCCTACTTCACTGTAGCTCCCAGAGACTTATGACAGTCTTCTG
ATGGCTACTAAGATAGACCGTCTAATGCAATAGGAAGTTATAACAGCAAT
AAGAAACAATAGCAATTAAAATTTTTTAACCTACCACATAAATCAAAATA
TAAACAAATTTCAAGAGATATCTTTACCTACTATTCATAAGCGGGACGGC
CGATAAAACAAAAAATTGGGGGGAAATTGCTAGAGAACAACAGTAAGAAT
TATATGATCCTAACAATTTTAAAATACAGGTATTTTGAAAACAAAAATCA
CTGACATAAATATGTAAACTAAAAGACAATAAGTTATAGGCCGAGATTAT
AACACATGTCCTAGTGACCAAGAACCACTTGGATCTCACGACTTCCCACA
TTTTTTATCCCCGACATAATTATTACGCATTGCATGAATAAATGTCCTAC
TTATTCTCCTTAATAGCCAGTCCTGGTCTATTCTCTTTATGCATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_n12.b1 MSMg01no103_n12.b1 CHROMAT_FILE:
MSMg01no103_n12.b1 PHD_FILE: MSMg01no103_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:53 2005
         (192 letters)



>mm_chr12_42160346_42160937
          Length = 592

 Score =  331 bits (171), Expect = 2e-95
 Identities = 183/187 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgatatccaggtcctagaagataataacaaatgatcccagaagtctatgttctcaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgatatccaggtcctagaagataataacaaatgatcccagaagtctatgttctcaggg 260

                                                                       
Query: 61  gctgagctggtaattagttcttcaaatttacaaacaagagaatttaagtaaacacaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgagctggtaattagttcttcaaatttacaaacaagagaatttaagtaaacacaagta 320

                                                                       
Query: 121 atacgatataagctttacaacgaagggatagtatatgtattaaaaacatcatgtgacttg 180
           ||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ataagatataagctttagaacaaagggatagtatatgtattaaaaacatcgtgtgacttg 380

                  
Query: 181 agttcta 187
           |||||||
Sbjct: 381 agttcta 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no103_n12.g1 MSMg01no103_n12.g1 CHROMAT_FILE:
MSMg01no103_n12.g1 PHD_FILE: MSMg01no103_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:53 2005
         (132 letters)



>mm_chr12_42262693_42263224
          Length = 532

 Score =  248 bits (128), Expect = 1e-70
 Identities = 131/132 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagggagcccttggacaggaatgcaggcagccagggaggccagaggggaaaggggctaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aagggagcccttggacaggaatgcaggcagccagggaggccagaggggaaaggggctaac 273

                                                                       
Query: 61  tctctggtagagatcccaaagcctacttcactgtagctcccagagacttatgacagtctt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tctcgggtagagatcccaaagcctacttcactgtagctcccagagacttatgacagtctt 213

                       
Query: 121 ctgatggctact 132
           ||||||||||||
Sbjct: 212 ctgatggctact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)