BAC Information

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BAC

Clone NameMSMg01-104J17
Chromosome12 (Build37)
Map Location 57,175,122 - 57,175,531
singlet/doubletsinglet
Overlap geneLOC382601
Upstream gene2700097O09Rik, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600
Downstream geneMbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104J17.T7 (MSMg01no104_j17.b1)MSMg01-104J17.TJ (MSMg01no104_j17.g1)
ACCAG319175AG319176
length719727
length of high quality
(start - end)
609 (42 - 650)236 (78 - 313)
definitionCHROMAT_FILE: MSMg01no104_j17.b1 PHD_FILE: MSMg01no104_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:55 2005CHROMAT_FILE: MSMg01no104_j17.g1 PHD_FILE: MSMg01no104_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAAAAAGATCACACTACAACTACCATGTGGTGTATGCTCAAAGACTCA
ACATCCTACTCCTCAGATACTTTCTCAGTCATATTATTGCAGCTCTGTTC
ATAATAGTTAGAAAATGGAAAGGACCTAAATGCCCTTCAACTGATGAATA
GATAATAAAAATGTGGAGCACATATACAATGGAATACGATTAAGATAAAA
AGAAAACAAAAATTCTGAACTTTTTCAGGTAAATGTAAGGAACTAAAAAA
TAGATTGAGGGGGAGTAATCCAGACTGAGATAATGAGGACAAACATCTAA
TGTTCTCTCTCTTCTGAGGATCCTAACTCCAAATCTTCAGATATGAGTTC
ATATCCCTGAATAACTACAGAAAACAGGAAAATACAAAGGTACAGTTATG
CCCAGATTGTGAGGTCCTCGCAGACCACCAGGAGTCCAACTCATATGCAA
AAGCAAAGAGTCTTTATTCAGTCTCCAGCTTAGAACCTCTGATCTCTCCA
GCACCATAGATGCCATGAAAGGTCCTGAGCTGGTACAAGCCTTGCCTATT
TATCATGGTTGCTGTACCAGGGTAAAGGACTTCCCAGCTTGGCTGTTACC
TGATTGGTTGACATTTGTTTGGTGCATGTCTATGGGTTAGTAATGATTTC
AGCTTGGTATGAACAATGG
NCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGCCTTGCAACTATCAGCTG
GCAAAATGAAACTCAGAAAGGATTAATTTCTTCTAAACATTATATCCAGA
GTGAAATGTTCATTGTGGTTGTGGTTGTTGTTGTTGTTGTTGTTGTTTTG
TTTTGTTTTTAATGAAGTGTCTGATCTAGAAGTCGGGAGAAGCCCTGATT
CTGCGTTTCTAACAAGTTGGTGATGAATGCTAGCTTGCCAGATTATTAAT
CACTCTCTGAATAGAAAGCTAGAGGGCATTGCCTCTCCCTGCATGTCAGA
GGCAAGTAGAAAAGTGCGCCTGTGCGTGTGTGTGTGTGCGCGCGTCTGCG
TGCTCATTCTTTTTCCTCCTTCTTCCTCACTTTCTTCGCTCCTATTCTTT
CCTCTTTCTCCCTCTTTTCCTTCTCTATTTTTCCTTCCCTCTTTCCTTTC
TTTTTCTCTCCCCTCCCCCTTCTCCTCTTACTTTATTTCTTCTATCCTCT
TCCCCCCTTTCTTCTCTTTTCTTCCCTCTAACATTCCCCCCTCTCTTATC
TTCCCCTCTCACTTACCCTATATATATCCTCTCTCCCCTATGTATCCCAT
TTCCCATATTTTCCTTTCCCCCTTTCCCTTCCCTATTTCTTAACTTCCCC
CCTCTCTTTCCCACTTTCCCTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_j17.b1 MSMg01no104_j17.b1 CHROMAT_FILE:
MSMg01no104_j17.b1 PHD_FILE: MSMg01no104_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:55 2005
         (609 letters)



>mm_chr12_57174523_57175531
          Length = 1009

 Score =  777 bits (402), Expect = 0.0
 Identities = 408/410 (99%)
 Strand = Plus / Minus

                                                                        
Query: 199  ttaagataaaaagaaaacaaaaattctgaactttttcaggtaaatgtaaggaactaaaaa 258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 ttaagataaaaagaaaacaaaaattctgaactttttcaggtaaatgtaaggaactaaaaa 950

                                                                        
Query: 259  atagattgagggggagtaatccagactgagataatgaggacaaacatctaatgttctctc 318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  atagattgagggggagtaatccagactgagataatgaggacaaacatctaatgttctctc 890

                                                                        
Query: 319  tcttctgaggatcctaactccaaatcttcagatatgagttcatatccctgaataactaca 378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  tcttctgaggatcctaactccaaatcttcagatatgagttcatatccctgaataactaca 830

                                                                        
Query: 379  gaaaacaggaaaatacaaaggtacagttatgcccagattgtgaggtcctcgcagaccacc 438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829  gaaaacaggaaaatacaaaggtacagttatgcccagattgtgaggtcctcgcagaccacc 770

                                                                        
Query: 439  aggagtccaactcatatgcaaaagcaaagagtctttattcagtctccagcttagaacctc 498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  aggagtccaactcatatgcaaaagcaaagagtctttattcagtctccagcttagaacctc 710

                                                                        
Query: 499  tgatctctccagcaccatagatgccatgaaaggtcctgagctggtacaagccttgcctat 558
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 709  tgatctctccagcaccatagatgctatgaaaggtcctgagctggtacaagccttgcctat 650

                                                              
Query: 559  ttatcatggttgctgtaccagggtaaaggacttcccagcttggctgttac 608
            ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 649  ttatcatggttgctgtagcagggtaaaggacttcccagcttggctgttac 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)