Query= MSMg01no105_a09.b1 MSMg01no105_a09.b1 CHROMAT_FILE:
MSMg01no105_a09.b1 PHD_FILE: MSMg01no105_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:30 2005
(466 letters)
>mm_chr12_80749652_80750517
Length = 866
Score = 839 bits (434), Expect = 0.0
Identities = 455/462 (98%)
Strand = Plus / Minus
Query: 5 gaattccagtatctaccctactcactgccagccaggtataagcacagtgatgagccactg 64
||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 666 gaattccagtatcaactctactcactgccagccaggtataagcacagtgatgagtcactg 607
Query: 65 cctttcctgggctccaaaggcataatcattctttttgtactgagaatagtctatctgctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cctttcctgggctccaaaggcataatcattctttttgtactgagaatagtctatctgctc 547
Query: 125 caggaacattttttaaaatattactttttgtaccttaaagcatcctaattgcagagatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 caggaacattttttaaaatattactttttgtaccttaaagcatcctaattgcagagatga 487
Query: 185 cagtgacttggtctttttatccaaacaaagccttgggtgagtcagacattctgaattttg 244
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 486 cagtgacttggtctttttatccaaacaaagccttgggtgagtcagacagtctgaattttg 427
Query: 245 atcccagatccgttaaagcttgtagaatgccttgctcttaaggagacagaggccggaact 304
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atcccagatctgttaaagcttgtagaatgccttgctcttaaggagacagaggccggaact 367
Query: 305 ttcctgtgagaaattgttcaggttcattgagccctttcatcgccaaggcttgagaaacgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 366 ttcctgtgagaaattgttcaggttcattgagccctttcatcgccaaggcttgagaaatgt 307
Query: 365 cctggagtgatttttcagcatgctctactcttgcttcccgaccatgacagtgtctggtca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 306 cctggagtgatttttcagcatgctctactcttgcttcccgaccatgacagtgtctggcca 247
Query: 425 accctcctgctcccagagagcccctgggcgaggcaaacagaa 466
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 accctcctgctcccagagagcccctgggcgaggcaaacagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_a09.g1 MSMg01no105_a09.g1 CHROMAT_FILE:
MSMg01no105_a09.g1 PHD_FILE: MSMg01no105_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:30 2005
(345 letters)
>mm_chr12_80577554_80578301
Length = 748
Score = 576 bits (298), Expect = e-169
Identities = 333/346 (96%), Gaps = 3/346 (0%)
Strand = Plus / Plus
Query: 1 ttcacagtatgctcaggcatgcaacttgaaacggcttgcacgataactgaaattcagtga 60
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 201 ttcacagtatgctcaggcatgcaacttgaaacggcttgcacgctaagtgaaattcagtga 260
Query: 61 aagccagctgtttgggaaagagctgtcaggagattagggggctctgttaaaggagagttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccagctgtttgggaaagagctgtcaggagattagggggctctgttaaaggagagttg 320
Query: 121 tccaggaatacgttttccgaaacaggatatcagtgtagggaaagctagcacacttacaca 180
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tccaggaatacgttttcagaaacaggatatcagtgtagggaaagcaagcacacttacaca 380
Query: 181 ttccagctcccatgcgcttacactgttgcatctcttttcagccccttcatcttaaattat 240
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ctccagctcccatgtgcttacactgttgcatgtcttttcagccccttcatcttaaattat 440
Query: 241 t---tattcttggtgggcaggtgtctgcttttaaggcttcttttcacgtgtgatatgcgc 297
| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tatttattcttggtgggtaggtgtctgcttttaaggcttcttttcacgtgtgaaatgcgt 500
Query: 298 ggcagagcttgctttttttgagaagtaaagacagtccaaccctgct 343
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcagagcttgctttttttgagaagtaaagacagtccaaccctgct 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 748
Length adjustment: 9
Effective length of query: 336
Effective length of database: 739
Effective search space: 248304
Effective search space used: 248304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
