BAC Information

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BAC

Clone NameMSMg01-105J14
Chromosome12 (Build37)
Map Location 100,033,830 - 100,034,146
singlet/doubletsinglet
Overlap geneEml5
Upstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14
Downstream geneLOC100039845, Ttc8, EG667779, Ches1, LOC100039892, 2610021K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105J14.T7 (MSMg01no105_j14.b1)MSMg01-105J14.TJ (MSMg01no105_j14.g1)
ACCAG319910AG319911
length686712
length of high quality
(start - end)
532 (42 - 573)317 (89 - 405)
definitionCHROMAT_FILE: MSMg01no105_j14.b1 PHD_FILE: MSMg01no105_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:17 2005CHROMAT_FILE: MSMg01no105_j14.g1 PHD_FILE: MSMg01no105_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAATAATTGCGGCGCTAATACATCACTATCAAAGAGGACCGCGGAATT
CAAGGTTTCCCCTAGAAACTGACCCTGGAGGAAACTACTTACTAGCTTGC
TCCTCAAGGCTTGCTCAATTTGCTTTTCTACACAATCCAAAGCCATATTA
CAAAATATTTTTTATTCATCTGATGTAGTTGTACTCTTGGAGGCTAACTG
CTGGATAAACTCACCCTTGCTAGGTCTTTCTGAACTCCAGATGGCTGGTT
TAACTCAGCTATTCTGGCTCAAACTCCTCCCTCACCAAGATGACTGATTC
AAACTGGCTTCTCTCAGCTTCTCACTGAATTGCTCTGTTTGGCTTCAAAC
TAACTCTGGCAATTTATTCTAATCTTCTTGATCCTTCTCTGGCTTTACCT
GCCTCTGTGGACCTGCACTGAACTGCATAAACTCACGAATGAATTCCAAT
CCACTTCACCACGCTCACTGCACTGACCCCAACTGACTGAATTCAACTAC
ACTGACTCACTGACCTGCCCTTTCAAACATGCTCCTTCCTTCTGTAAACT
AACCTTACTTTTATTGCTTGTGATTAAAGGGCCATACTCAAGGTGTGTCT
ATTCCATCCAGAGTATCCATGTTGCTGGATTGAAATTCCTCTATATGAGT
TGCCTAGAGATAGTATCTGTCCACAGAGTTCTATAA
CCTCTTCTCTACCCTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCTTAGAGA
TCCCCATTCATGTGTGAGCAGGAGCTTGAGGTGCCCTGCAGGAAATGTCT
GGTTGTGAGCTATGGTCCTCTGTAAGAGCGGCAACTGCTCTGAAGTGCTC
AAACATCTCTCTAGCAGCTTAAGCAGCTTTAAAATTTAAAATTTAAAGGT
TTTAAAATGATGTAGTTTACTTATCCTGCATTTAAAAATAGACCTTTTTA
TTAATATTGTAAGGTGGCTTGTGAGAGGCACTGTTTGTATCAATGGGTGA
GGGATGGATACTGACGTGATTAAACTCCAAGAGAACCCACTTTGGTCTTG
CCTTAGCTTCCTGGGTGGATTAAAGATGTGCACTCTTACTCAACTCAGCT
GTTGTACACGCTTGATTTCAGTTGTCTCACAGAAAAGGATTATTGTTGTT
TAAAAAGTCTTACCACTTGGCCACCACCTTGAATCCCAGTACCTATGGAT
CCTGACGCATACGCCGGCACATCTCTGAATTTGATGCCATCCTGAGCTAT
AAATTGAGTTCCAGGATTGCCAGGGGACCACAAAAACCCTGTCTCAACCT
CTCCCCACCCTCAATAAAATTACATATCCCTTAAACACAGGGCATACGGC
CCCGCAGTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_j14.g1 MSMg01no105_j14.g1 CHROMAT_FILE:
MSMg01no105_j14.g1 PHD_FILE: MSMg01no105_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:17 2005
         (317 letters)



>mm_chr12_100033503_100034219
          Length = 717

 Score =  582 bits (301), Expect = e-171
 Identities = 313/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcccttagagatccccattcatgtgtgagcaggagcttgaggtgccctgcaggaaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 644 ctcccttagagatccccattcatgtgtgagcaggagcttgaggtgcaatgcaggaaatgt 585

                                                                       
Query: 61  ctggttgtgagctatggtcctctgtaagagcggcaactgctctgaagtgctcaaacatct 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 584 ctggttgtgagctatggtcctctgtaagagcggcaactgctctaaagtgctcaaacatct 525

                                                                       
Query: 121 ctctagcagcttaagcagctttaaaatttaaaatttaaaggttttaaaatgatgtagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctctagcagcttaagcagctttaaaatttaaaatttaaaggttttaaaatgatgtagttt 465

                                                                       
Query: 181 acttatcctgcatttaaaaatagacctttttattaatattgtaaggtggcttgtgagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acttatcctgcatttaaaaatagacctttttattaatattgtaaggtggcttgtgagagg 405

                                                                       
Query: 241 cactgtttgtatcaatgggtgagggatggatactgacgtgattaaactccaagagaaccc 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 404 cactgtttgtatcaatgggtgagggatggatactgacgagattaaactccaagagaaccc 345

                            
Query: 301 actttggtcttgcctta 317
           |||||||||||||||||
Sbjct: 344 actttggtcttgcctta 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)