Query= MSMg01no106_c20.b1 MSMg01no106_c20.b1 CHROMAT_FILE:
MSMg01no106_c20.b1 PHD_FILE: MSMg01no106_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:14 2005
(331 letters)
>mm_chr12_64082965_64083695
Length = 731
Score = 574 bits (297), Expect = e-168
Identities = 316/325 (97%), Gaps = 6/325 (1%)
Strand = Plus / Plus
Query: 9 aaaagttgtctggcatccataagtgctacacacacacacacac--taaaatcttaattaa 66
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 211 aaaagttgtctggcatccataagtgctacacacacacacacacactaaaatcttaattaa 270
Query: 67 ttaattaatcaattaattgagattctaaagccttataataaaattatgaactacaagtgt 126
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttaat----caattaattgagattctaaagccttataataaaattatgaactacaagtgt 326
Query: 127 ctttttccagggaaagtcagaaaaaaataaaaataaaaaagatgagggacatggaaagaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctttttccagggaaagtcagaaaaaaataaaaataaaaaagatgagggacatggaaagaa 386
Query: 187 ccttacttcacctgtagattgttactggctttggggagagtataaaaggttttagtgata 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccttacttcacctgtagattgttactggctttggggagagtataaaaggttttagtgata 446
Query: 247 cattagataacaatacaagttttgggaaagaaaaaatatttaaaatttttgttcagggta 306
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 447 cattagctaacaatacaagttttgataaagaaaaaatatttaaaatttttgttcagggta 506
Query: 307 tttttggcaatgtgaaaaaccatag 331
|||||||||||||||||||||||||
Sbjct: 507 tttttggcaatgtgaaaaaccatag 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space: 232484
Effective search space used: 232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_c20.g1 MSMg01no106_c20.g1 CHROMAT_FILE:
MSMg01no106_c20.g1 PHD_FILE: MSMg01no106_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:14 2005
(593 letters)
>mm_chr12_64191763_64192755
Length = 993
Score = 1025 bits (530), Expect = 0.0
Identities = 539/542 (99%)
Strand = Plus / Minus
Query: 1 acagcttccctccaataatataatgaggtatccggattgacattaggatcttctttttaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 542 acagcttccctccaataatataatgaggtatctggattgacattaggatcttctttttaa 483
Query: 61 gtagacatactctaacatagagatgttcaaaaaatgtaaggcaagaatatgatcagttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtagacatactctaacatagagatgttcaaaaaatgtaaggcaagaatatgatcagttaa 423
Query: 121 gcatctgaaagtgagtacaaatactaagttgactctgtcatttatatagctgtttgtaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gcatctgaaagtgagtacaaatactaagttgactctgtcatttatatagctgtttgtaga 363
Query: 181 acttacaaccaatagcatcagctgtccatgaagaaacaaatttcatttcagttttgtatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 acttacaaccaatagcatcagctgtccatgaagaaacaaatttcatttcagttttgtatt 303
Query: 241 tttgtttctttgttttcttttcccttccatatttcatttcacgtgatatatttaagctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tttgtttctttgttttcttttcccttccatatttcatttcacgtgatatatttaagctgc 243
Query: 301 ttaataagcctgctttgggaataaaaataagtaaataaataactgcacagcataggaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttaataagcctgctttgggaataaaaataagtaaataaataactgcacagcataggaaat 183
Query: 361 tattagctgagtgaagatatagcctacaaaatggaaagaaaaatattgccaaaagattaa 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 182 tattagctgagtgaagatatagcctacaaaatggaaagaaaaatattgtcaaaagattaa 123
Query: 421 tgtctcaaatatatgtaatctcaaaaattaaatatcacagaatggacaacacattcatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgtctcaaatatatgtaatctcaaaaattaaatatcacagaatggacaacacattcatta 63
Query: 481 accataaacatatgattttttcatattatatattttattttatttatgaatttattcact 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 accagaaacatatgattttttcatattatatattttattttatttatgaatttattcact 3
Query: 541 gc 542
||
Sbjct: 2 gc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
