BAC Information

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BAC

Clone NameMSMg01-107K01
Chromosome12 (Build37)
Map Location 73,088,352 - 73,257,474
singlet/doubletdoublet
Overlap geneDaam1, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik
Upstream genePsma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190, LOC666213
Downstream geneRtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107K01.T7 (MSMg01no107_k01.b1)MSMg01-107K01.TJ (MSMg01no107_k01.g1)
ACCAG321338AG321339
length1,2401,301
length of high quality
(start - end)
244 (164 - 407)273 (133 - 405)
definitionCHROMAT_FILE: MSMg01no107_k01.b1 PHD_FILE: MSMg01no107_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:09:46 2005CHROMAT_FILE: MSMg01no107_k01.g1 PHD_FILE: MSMg01no107_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:09:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,088,352 - 73,088,595)(73,257,202 - 73,257,474)
sequence
NCCGGCTCTTTTNTGGACATTGCGCGCTAACGACTCCTATGGGAGAGGAT
CCGCGGAATTCCTAGATAAAAAGAANACCTTTGAGGGCCCCANAGNGNAN
GAACNNGAANANNNGAGACTTTAAAAGGCTCCCTGNNNANNGNNGNNNNG
NNCATANCAGAANCTTTAGAGATNAGNTTATAAAACCATGAATCAAGCTA
GACTACTCTAATGTGGTGTGTGAAGAATGTTATGTTTTTCCCTAAAGAGT
TCTGTTTTGTAATAGAATATTTCCAAATAAGTCAAACATCGAGAACAGCT
CTACATTAAGAGAAAATGGTTGGAAAAAAATATGTTTTAAAATCTGAGGG
CCAGTGAGATGTCTCAGTGGGTAAAACCACTTGTGATGCAAACCTGACGG
CCTGAGTTCTTTTTTGGTGCCCACCAGGAGGAGAGAAGTCACTGTCAAAG
NTGACCTCTGATTTCTTCCCCGCCACCACTGCACAAATGCACCTGCATAC
ATAACATGCGTACACCCAACTAAACCTTAAAATATTTAAAGTAATTATAA
AATATGTAAAACATACATGTCTTAGTCAAATTTGTTATGCATAAAAACAT
GGAAAACATTCTTTAGTGTGCATAATATCACTGTAATACTGAAAGCTTTA
ACAATATAAGCAATGCAGGTAACACAAGATAAATCAAGTCAATTAGAAAC
CATGGACTTGAAGATGATACAAACTTACTGTGGTCTGAATCTGAAGAAAA
TAGAAGGTTGAATTAGAAAGTAGTTGATAGGCACAGGATTGAGAATTCTG
TGGACTCTGGAGCCTGAACTCTGGAGTGGGCCGAGCAGGGCCTGCAGAAA
CTGGGCCCCTTACCCTAGGAACAGGGTACTGATAGGTATTAGCGCCCCCC
CTGGGGTTGTCCGGGTAAAAGCCAGGAACTTCTTTAGAAAAGCCAACTCT
CTAAAGTTATGAAAAAAGAAAGGCCCCTCGAAGAAACCACGTTACGGGTT
AAGAGGGGGCTATAGAAAAAAATGGCACCAACTGGGTTAACTGCTGGTAT
AATTTGGTTAAATTTTTCAAAAAGGATACCCCCACCCTCGGAGTTTGGGC
CGGCCTGTGAAAATAGAACTTCTTTTAATAATTTCCGGAACTGTGTAAGA
TTGGAGCCATAATGGGGTTGGGCCGACTCAAAATATGGGGGAAATAATTA
TAGATGCTCACAGCTCGCACCTATGGGATTCCCTTAATAT
CGATTGTTTTNNAAACCATTGGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGCACTTTTAAGGCTAGNAANCTCTGT
GGCCAGGTCAGGCTGATCCCTTTAAGGGCCCAAAAAGAATTGAATGTGAT
TCTTTGAGCAGCATATCTCTTCAAGACAGGGGTGGCTGAGGGCCAGAGAC
AATGAATTCTAGGCCACATGCATGCAGTTATGCTAGCATGTACAATTTAT
GAAACCCAGACTGGAAAATATGAAACTGGACAATGAACATCAGGCCTAAT
CCTGATAATTGACTTAATCATGTGATGCTCTAAAGAAACTGAACAGTTTT
TGCCCTGTTGGGTGACTTTCTAGAGAGCTACTGAATTAACATCTCTCCCT
AGAGTGGTGTTTTTTTCAATCAGCTAAACAATGTCTCGTTCAATTTTATC
TTGGTGAACAATTTTTTTTCCCCCCCCCCGGTAGGTGGCGCTGCACGCCT
TAAAAACGAGGACTATGGAGGCAAAGGCAGGCAGATTTCTGAGTTCGAGG
CCTGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACTAAGA
ATCCCTATCTTGAAAAAAAAATGGGTTTATTAGAACAGACCTGCACACAT
CCTTATAGAACAGACTCCTCATAGATTTTTTCTTACTACTGCATTTATAC
ATCTACTCCATCAAATTTTGTGTTTTCTGTTTTGTTTCACAATTATCTTT
TGTTCAAGTTTGACTTTCCCACCAACCACCTATATTATCCACTTCGATGT
TTTGTTTCTTTTACTTAAAGGTTTGACTCCTCTCATCCATCCCTTTTATA
TATTTCAAGGAGTGTATTTTTTTAAATGGCTTAAAATTAACTTGCTTTCC
CGCTTTCTCATCCCCCTTTGTTCGATTTTGGGAACGTTCTATTTGTTGTT
TCGAACTTTTCATTCTCCTTCTTTTTTTATTTAATGTTTTTGTAATTTAT
TCCTTCCCACCCCACTTTACTTTCTTATTTTGTTAATATTTATGTTATAA
CTTTTTTTGCACTCAATATCTTTTGTGTAAAATTTTTGCAGATATAATTT
CTCGATAAACTCTCTTTCCTTCTATATTTTCTAGTGTCTCTCTATCCTCT
CATAACATATTTATCTTCCCCCGTCTTTATCCTTCTTAAATCTATCCCAT
AACTATATCCTATCGTGGGCTAATACACTCTCCCTCTACTNTCTTATCAC
TTCCCATATCTTATAACTCCTCCATTCTTCTATTATAGTATCCTTCATTA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_k01.b1 MSMg01no107_k01.b1 CHROMAT_FILE:
MSMg01no107_k01.b1 PHD_FILE: MSMg01no107_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:46 2005
         (244 letters)



>mm_chr12_73088152_73088795
          Length = 644

 Score =  460 bits (238), Expect = e-134
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttagagatnagnttataaaaccatgaatcaagctagactactctaatgtggtgtgtga 60
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttagagatcagcttataaaaccatgaatcaagctagactactctaatgtggtgtgtga 260

                                                                       
Query: 61  agaatgttatgtttttccctaaagagttctgttttgtaatagaatatttccaaataagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatgttatgtttttccctaaagagttctgttttgtaatagaatatttccaaataagtc 320

                                                                       
Query: 121 aaacatcgagaacagctctacattaagagaaaatggttggaaaaaaatatgttttaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacatcgagaacagctctacattaagagaaaatggttggaaaaaaatatgttttaaaat 380

                                                                       
Query: 181 ctgagggccagtgagatgtctcagtgggtaaaaccacttgtgatgcaaacctgacggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagggccagtgagatgtctcagtgggtaaaaccacttgtgatgcaaacctgacggcct 440

               
Query: 241 gagt 244
           ||||
Sbjct: 441 gagt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no107_k01.g1 MSMg01no107_k01.g1 CHROMAT_FILE:
MSMg01no107_k01.g1 PHD_FILE: MSMg01no107_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:46 2005
         (273 letters)



>mm_chr12_73257002_73257674
          Length = 673

 Score =  520 bits (269), Expect = e-152
 Identities = 272/273 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagaattgaatgtgattctttgagcagcatatctcttcaagacaggggtggctgaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaaagaattgaatgtgattctttgagcagcatatctcttcaagacaggggtggctgaggg 414

                                                                       
Query: 61  ccagagacaatgaattctaggccacatgcatgcagttatgctagcatgtacaatttatga 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 caagagacaatgaattctaggccacatgcatgcagttatgctagcatgtacaatttatga 354

                                                                       
Query: 121 aacccagactggaaaatatgaaactggacaatgaacatcaggcctaatcctgataattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aacccagactggaaaatatgaaactggacaatgaacatcaggcctaatcctgataattga 294

                                                                       
Query: 181 cttaatcatgtgatgctctaaagaaactgaacagtttttgccctgttgggtgactttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cttaatcatgtgatgctctaaagaaactgaacagtttttgccctgttgggtgactttcta 234

                                            
Query: 241 gagagctactgaattaacatctctccctagagt 273
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gagagctactgaattaacatctctccctagagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)