BAC Information

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BAC

Clone NameMSMg01-108D22
Chromosome12 (Build37)
Map Location 42,856,841 - 42,857,311
singlet/doubletsinglet
Overlap geneImmp2l
Upstream geneLOC100043162, Lrrn3
Downstream geneEG638533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108D22.T7 (MSMg01no108_d22.b1)MSMg01-108D22.TJ (MSMg01no108_d22.g1)
ACCAG321743AG321744
length1,359712
length of high quality
(start - end)
---471 (79 - 549)
definitionCHROMAT_FILE: MSMg01no108_d22.b1 PHD_FILE: MSMg01no108_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:02 2005CHROMAT_FILE: MSMg01no108_d22.g1 PHD_FILE: MSMg01no108_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTATTTTATTCTTNNTCTTNNCTCTCCTCTTTCTTCTNNNCCTTCCT
CTTCTTACTCTAAANNATACTTTCTCCCCTTTTCTATTATCTCCCNTCTT
TCCCCCACACATACACAACCCTTATATTAATATAACNATTTAATCACTCT
CTCCTNACTCCANCTNCCCTCACACCTNCTCTTTCCTCACTTTCTCACTA
TATTTTTATATCTCTTTCTATCTTTCTCTTTATCTATNATACTCACTAAC
TCCACAATCCCACTCCTACCCTAATACTTCCACCCACATAACTAACCCAT
CAATATTACCTCTACTACTTCTTTATATCCTCTTCTATACTCTACCAATC
CACCTCCTCGTCCTATATATATACCTCGACATACATCATATCTTATACCA
CACTACAAACATCATCCAACTCACTTACGCGCTATATCGTATAACAATCC
ACACATCCTACATCTCCTCATCCCATCTTTCATCTCTCTTCCCATCCTGC
CTTGACCAATCTCCGCACCCTACGCTCGCTCTCATTTACGTATGCCTTCG
CTCGAGCGCGGCTCGATGCGCGATCGGCCCGCATACGGTGTACTGGCGCG
CCGGGCATCTGATACCTGAGCGGAANCGATGAGGTAGCGCCGCGGTCACG
ACGGATATGGCACTGTGCGCCACGCGTGCGTACGCGCGGGCAGTCTTGCG
GTTCGTATCACTGTACACCTCNATTTCGCGCGTTCGTGCGCTGTTATGTG
CGGTTTGCCTCGGTGTCGGTGCGCTNGAGTGCGGTGAGCGCGTCGGTGGC
CGCGCGCGGCGCGACTGTCGGCGGCGGCCGGGACGACGCGCGACGGCGCC
GTGACGCGGCGGCGAGAAGAGGCGAAGAGGAAGAACACTGTGCGGCACGC
GACGCGAGCGAGGAGGGAAGCACGATACTACGGATGTGGCAATGCTGAGG
GCGCGCGCTTCTCGGTGTGAAATCTCGCTCAATCGTCGCGCGGGAGTCAA
TGACGCGCAATACAACGAGAGGACGCACGCGGAGGCGCTCGACGCGAGAT
NCGAGACGAGAGCAGCGTGACGCTCACGCAGCGAGCAGGGACATGTCGGT
AACGCGACGTCGACATACCGACTGATAAGGCATCGCGCCACCGTACTATA
CTGTAACGATACGCTGAGCGCAGATATATATGATAGATGCGACGTGGTAA
GCGCGGCCAGATGAACATANANCGCACTGTACTGATAAATGCGTCAAGAT
ATACGATGTACTGACATACGACGATACTATATTGCAGGCCGATCGCGCTA
CCACATCNTATGCGGTGGCGCTAGCGCGCGTCGNGCACGCGTCAGTCCGT
TGATACCGN
NAAACCGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGTGACCCAAATACTAAGG
CAAACTCAAAACTACATTTTGAAGAATATCTGACTTGAAGAGAGGATGTC
CCTGGGAGCTTTTCATCTAACCTAGAATACTGGGGTCTGGGCTCTAAAAT
TTTCATAACAGGATTTAAAAAAAAAAAAAAGGCTTGCCATTTGTGTGGTC
CTGTGTGTATGGGAACCTAATTAGCACTATAGATGTCTGCTTTTTCAGAA
TGTCTTCAGAACTGAACTTGACTGGTTCCGATCACAAATATGACTAACAT
AAAAGAAATTTGCCAAACGGAACTCATGAGGGTAGTCAAATGCTGTTGTG
ATTAGTTACATTAGCATCATGCCATGTGCTGGTTAAAGCAGAGACTCCCA
GCTCTCATCTCAAACTACCTACATTGAAAATTCCAAGAATAGAGCCCAAC
AGTTGGTAGTTTTAATGAGGACTCTATCTAGCTCTATCAAATTGGAAGCC
CCAGACTAATGGGCTGACAAAGAATCCATGAAGTCCTGTGGTGCTGGAGG
CACTTCTGTCCTTGCGATGCATTTAGCCTGGCAGATAATCAGTACAAGAT
CGCCCACTGATGGATCAACTTCATTAACGTGTGTGTCTCATTGTTAAAAA
TTACCTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_d22.g1 MSMg01no108_d22.g1 CHROMAT_FILE:
MSMg01no108_d22.g1 PHD_FILE: MSMg01no108_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:02 2005
         (471 letters)



>mm_chr12_42856791_42857661
          Length = 871

 Score =  903 bits (467), Expect = 0.0
 Identities = 470/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagtgacccaaatactaaggcaaactcaaaactacattttgaagaatatctgacttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atcagtgacccaaatactaaggcaaactcaaaactacattttgaagaatatctgacttga 462

                                                                       
Query: 61  agagaggatgtccctgggagcttttcatctaacctagaatactggggtctgggctctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agagaggatgtccctgggagcttttcatctaacctagaatactggggtctgggctctaaa 402

                                                                       
Query: 121 attttcataacaggatttaaaaaaaaaaaaaaggcttgccatttgtgtggtcctgtgtgt 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 401 attttcataacaggatttaaaaaaaaaaaaaaggcttaccatttgtgtggtcctgtgtgt 342

                                                                       
Query: 181 atgggaacctaattagcactatagatgtctgctttttcagaatgtcttcagaactgaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atgggaacctaattagcactatagatgtctgctttttcagaatgtcttcagaactgaact 282

                                                                       
Query: 241 tgactggttccgatcacaaatatgactaacataaaagaaatttgccaaacggaactcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgactggttccgatcacaaatatgactaacataaaagaaatttgccaaacggaactcatg 222

                                                                       
Query: 301 agggtagtcaaatgctgttgtgattagttacattagcatcatgccatgtgctggttaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 agggtagtcaaatgctgttgtgattagttacattagcatcatgccatgtgctggttaaag 162

                                                                       
Query: 361 cagagactcccagctctcatctcaaactacctacattgaaaattccaagaatagagccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 cagagactcccagctctcatctcaaactacctacattgaaaattccaagaatagagccca 102

                                                              
Query: 421 acagttggtagttttaatgaggactctatctagctctatcaaattggaagc 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 acagttggtagttttaatgaggactctatctagctctatcaaattggaagc 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)