BAC Information

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BAC

Clone NameMSMg01-108F11
Chromosome12 (Build37)
Map Location 41,236,717 - 41,236,888
singlet/doubletsinglet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108F11.T7 (MSMg01no108_f11.b1)MSMg01-108F11.TJ (MSMg01no108_f11.g1)
ACCAG321813AG321814
length728739
length of high quality
(start - end)
172 (77 - 248)---
definitionCHROMAT_FILE: MSMg01no108_f11.b1 PHD_FILE: MSMg01no108_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:10 2005CHROMAT_FILE: MSMg01no108_f11.g1 PHD_FILE: MSMg01no108_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCTCTATATTTGCGGCGCTATACGACTCCTTTTCAGAGGAGATCCG
CGGAATTCTTCAATTACGCTGTAGCCTCAGAATCACTTCAGTTGTAATTA
GAACAAGTTCTGGGGACTCTGAATTTACAGTTAAGTGAAGACCACCATGA
AGGAGGAAATACAGAGAATATGGACATACACATCTTGGTGGATTTCCATG
GTTTGAGTATGTGTTTGCTGGTTTGGAGTCTAATGTCTGTTTGTGTTGGG
GGACAGAGTCTCTCTATATCCCTGCCTGTTCTAGAACTCAACAGACTCAT
CCAAAACTGCGGTATGCTTTTTGTTTCTTTCTCCCAAGAGTTGAGATTAA
AATTGCGAATCACCATGCCTGTAAACCCTACATCTTTTATAATAATCTAC
TCTATAAATATTATAATACTACAAGATAATATAGCCCTCTGAATATGGTA
TATAAGCTGCATTTTACTACCATGTTTAATAATTTTAACAACTGTAACAG
GTATAATATTCTATTAAAAACACCGAATGATTTTATTTCTACATGACCCT
ACACTAATCATAGAGTTTCAATTTCCTCATGTGCGTTTTCTACTCATCAT
GAAAATGCTTATCTCCTAAAATGTTCGTTTCATTTCGCATAATACTAATT
ACACCGCGATTAATTCGTTATTTTATCCCTGATTGTTCTCCACTTAACCC
CCAACTTTTCACATTCTGTTTTATTTCT
ATATATCAATATAGTGGGAGGCCTGGCGGACGCCTGTTCGACAAATTGAA
GTGACCTATAGAATTTCCGCGCAATTCCATCCTGGCTTCCTTCACAGTTA
CGGACTACGATGTGGGAGTATAAGCTAAATAGACCCTTTCCTCCCCAGCT
CGACTCTGGTCATAGTGCTTGGTTGCAGCAATAGAAACTCTAACTAAGAC
AGGCATGTCTATGAACGGTAGTGCCAGTTAACTCATATTTCAGATTCCAG
CACAATACAACAGAGAGAAAGCTTAGGCTGAAACAGAATGACGGGCAATC
CGCGAGATCTTCAAATATTATATCTTCCTCTTCCGTTTGATATTTACTAA
CTACAAATGGGCGCTCCTTGATATGATCTTGAACCGTTGCTCGTCCGTTC
TCGCTCCCCCTGGTTTTTCTTTGTATTCGACCTGCTCCCCCTCTCCTTGT
ATCATTGCTACCATTCACCCTCCTCCCCCCCCCGCCACGCCTTGTCTGCT
AAATTATCGTTTATGTCCCTCTATTTCTTATCCAATCTTGCCTCTACCAC
TGTTTTTGTTATTTATCCCGCCTTTCACTAAAAGTTTCCTTCACTGATAT
ATATTGCCAATACTTTCCTTCTCTCCTTCCCTTTTCTTCATCTACCTTCC
TTTACGATCCCTTTCTTTCAACTCCCCCTATTTCCATCCTCTCTTTTTAC
TTTTTTCCTGCACCCCCCCCCTTCTTTTAATCCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_f11.b1 MSMg01no108_f11.b1 CHROMAT_FILE:
MSMg01no108_f11.b1 PHD_FILE: MSMg01no108_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:10 2005
         (172 letters)



>mm_chr12_41236517_41237088
          Length = 572

 Score =  317 bits (164), Expect = 2e-91
 Identities = 170/172 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaatcacttcagttgtaattagaacaagttctggggactctgaatttacagttaagt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 372 tcagaatcacttcagttgtaattaaaacaagttctggggactctgaatttacagttaagt 313

                                                                       
Query: 61  gaagaccaccatgaaggaggaaatacagagaatatggacatacacatcttggtggatttc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaagaccaccaggaaggaggaaatacagagaatatggacatacacatcttggtggatttc 253

                                                               
Query: 121 catggtttgagtatgtgtttgctggtttggagtctaatgtctgtttgtgttg 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 catggtttgagtatgtgtttgctggtttggagtctaatgtctgtttgtgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)