BAC Information

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BAC

Clone NameMSMg01-108G17
Chromosome12 (Build37)
Map Location 81,938,388 - 81,938,658
singlet/doubletsinglet
Overlap gene4933426M11Rik
Upstream geneLOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568
Downstream geneSfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108G17.T7 (MSMg01no108_g17.b1)MSMg01-108G17.TJ (MSMg01no108_g17.g1)
ACCAG321873AG321874
length720722
length of high quality
(start - end)
273 (43 - 315)186 (125 - 310)
definitionCHROMAT_FILE: MSMg01no108_g17.b1 PHD_FILE: MSMg01no108_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:17 2005CHROMAT_FILE: MSMg01no108_g17.g1 PHD_FILE: MSMg01no108_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCTATTTGCAGAGAATGCGCGGAATTC
CTAATTTTTTCCACTTTTCTACCTAGATTCTTTGACATCTCCAGAGATGG
AGATTTCTCCTTGTTTGACTTATTAACTTGTTAGCTTTGCTAATAGCTAC
ATATTAACATATAATTGTTAAATTTCTAAGCAGCAATACAAGGAAGATAG
GTACAAGTTTTCTTTTCCGCAAAGCTTTTTTGAGGGTAGAAAGTATTTTT
GATATTGCAATTCTTATGGGGGGTGGGGCATAAGTGGGTTTCAGGAAGTT
AAGACTAAGTACAGTATGTATGTTTACAAAATCTGCTATAGCATTAATTA
TTCTGACTAACAAGGAACACTTTATGAAATGTAGAGGGTGAGGTCAGTTC
TTCAGGTGTAGCAGACACACGTCTCCTCCAGAGCGGGTGGGACATATGTT
GTCACTGGCTTGAGTTCTGACAGTTCAGCCTTGTTGACTTAGGAATGGCT
GAGAGCACAAGACTGTAGCTGAGATTATTGCCTGCAGACGACTTTGAGTG
GTTCTGATGGTAGCCTGTCCACATTTCCTAAGCTTGGGGATAGGTGCAGA
GAGATTCATGGCCATAGTGAAAAAGCCTCTCTTCCCTTTAAAGTTGATCA
CATTACTGCTGGCTTGCAGCAGTAATGTTTTGAGTAAGTATATATACCTA
GATTTATTGACAGCTATGCA
TGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGGCTATAAAGTCCAGGCAGGAAGTGAAGC
AGAAAAGAAGTGGCACCCCCCGAGAATGGAGAGGTCAGAACGTAAGGAAG
AGCTATTCATATGCACAGATCAAAGGAACCCAAGAGCCAACTGAAAGAGC
TCCCAACATCCCAACCTGGAACATTGTGAGTGACAAAATAAAGAGGAATT
GTATTAACTGAAAATGTAAATAGTCAGGATTCTACACAGGTATGAATAAA
TGACAAATGAGAAAGGAAACTTAAATTCTCCCATGCAGGAAAATGCAAAA
TAGATGTCCTATCCTCATAAGAGAAGAATATATGCCAGCACTGGTGGTAC
AAGCATATACTCCCAGTTACTCGAGGGTCACAAGTTTAATGCCTGCCTAG
CGCGAAAGACAACATTCTAGGTCAAACTGAGCAACTTTTGACTCTCTATC
TCAAAAATTAAATGTACAATTAAGCCAGCACTATAACTCACTGATATAGT
GCCTGATTATTTCCCTAGGGAGCATAAAGTCCTGCGTCAATCTCTGGTGT
TTCCACATTCACACACTCCCATACTTACCCACTTTTTCCCCCCTTCCTTT
GCGCCCTGTTTATTTGTCGTCTTATTCCGCTTCCTCTTGTTGTTACTTAA
CCGCATGAACCCAAATACGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_g17.b1 MSMg01no108_g17.b1 CHROMAT_FILE:
MSMg01no108_g17.b1 PHD_FILE: MSMg01no108_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:17 2005
         (273 letters)



>mm_chr12_81938187_81938859
          Length = 673

 Score =  482 bits (249), Expect = e-140
 Identities = 265/275 (96%), Gaps = 9/275 (3%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcctaattttttcca-----cttttctacctagattctttgacatctccagagatg 57
           ||||||||||||||    |     ||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcctaatttt----aaaagccttttctacctagattctttgacatctccagagatg 257

                                                                       
Query: 58  gagatttctccttgtttgacttattaacttgttagctttgctaatagctacatattaaca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gagatttctccttgtttgacttattaacttgttagctttgctaatagctacatattaaca 317

                                                                       
Query: 118 tataattgttaaatttctaagcagcaatacaaggaagataggtacaagttttcttttccg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tataattgttaaatttctaagcagcaatacaaggaagataggtacaagttttcttttccg 377

                                                                       
Query: 178 caaagcttttttgagggtagaaagtatttttgatattgcaattcttatggggggtggggc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caaagcttttttgagggtagaaagtatttttgatattgcaattcttatggggggtggggc 437

                                              
Query: 238 ataagtgggtttcaggaagttaagactaagtacag 272
           ||||||||||||||||| |||||||||||||||||
Sbjct: 438 ataagtgggtttcaggaggttaagactaagtacag 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)