GCGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTCCTAACTTCTTTCTCCCCTCTTTCCTTTCTTCCTTC
GTTCCTTCCTTCCATTTTTCTTCTTTTCTTTCTTTATGCCTGCCTAAATG
CCTACTTGCCTACTATCTTGCTTCTTTTGTCCCTCTGGCTTGGCTTTCAG
CCCTCATGTTCCTAGAGGTCAGTCGGGAACTCCCTTATCTAAGAAAAGAA
CTCCAAGACGAAATTGGTTAGAGCAGAAACAAGCATGTTCCCCCAGGCTC
CTAACAGCTCTCTTTTAAGGGCCTTCTGAAAGGAATTTAGCCACTGCAAA
TCATCCTGCTTCCACAGATAGAAAATTAGCCAAGGGGGAAATACTACCAG
AATGGAGAGCTTCGTGGTGTCGTACTGCATTACAGAGAGAACACTTGAGG
ACCCAAATCATTGCAGCAGCATAACTACTCTAGGCCCCAGAGTCGCACGT
GTTTTAGAACATGTCCCAAGTACAGCAGATTCTGGCACAAAGAACATTTT
TATTTGATTGTCTAAAGAAACAGAATACCAGTTTTAGGGGGGAAATCCAC
TTATTAGGATAGAGATGTATAAAATAATTCTATTCACATTTCTGCCCCAA
AAATGGGAAAAGGAAGTTGTATATCATAAATAACACCACTTTGTAAATC

NNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGAAGGAA
TTTTAATGGGGTTATTTGATTTTCTGGATTCCACCTTCCTGAGTTCTTTA
TATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCT
TTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACTGTGTCTTTTTCCT
TGCAGAAGCTTTGCAACTTTATGAGGTCCCATTTATCGATTCTGGATCTT
ACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCAAT
ATCTTTGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAATTTCTCTG
GTTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGA
GACAGGAATGGATCAATTCACATTCTTCTACATGATAACCACCAGTTGTG
CCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGCTTTAG
CTCCCTTGTCAAAGATCAACTGACCATGGGTGTGTCGGTTCATTTCTGGG
TCTTCAATTCTGTTTTATTGGTCTATTTGTCTGTCGCTATACCAGTACCA
TGCATTATTTATCACAATTGCTCTGTAGTACAGCTTTT

Query= MSMg01no108_m03.b1 MSMg01no108_m03.b1 CHROMAT_FILE:
MSMg01no108_m03.b1 PHD_FILE: MSMg01no108_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:43 2005
         (639 letters)



>mm_chr12_6955555_6956593
          Length = 1039

 Score = 1197 bits (619), Expect = 0.0
 Identities = 631/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcctaacttctttctcccctctttcctttcttccttcgttccttccttccat 64
           ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 918 gaattctttgctaaattctttctcccctctttcctttcttccttcattccttccttccat 859

                                                                       
Query: 65  ttttcttcttttctttctttatgcctgcctaaatgcctacttgcctactatcttgcttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ttttcttcttttctttctttatgcctgcctaaatgcctacttgcctactatcttgcttct 799

                                                                       
Query: 125 tttgtccctctggcttggctttcagccctcatgttcctagaggtcagtcgggaactccct 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 798 tttgtccctctggcttggctttcggccctcatgttcctagaggtcagtcgggaactccct 739

                                                                       
Query: 185 tatctaagaaaagaactccaagacgaaattggttagagcagaaacaagcatgttccccca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tatctaagaaaagaactccaagacgaaattggttagagcagaaacaagcatgttccccca 679

                                                                       
Query: 245 ggctcctaacagctctcttttaagggccttctgaaaggaatttagccactgcaaatcatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggctcctaacagctctcttttaagggccttctgaaaggaatttagccactgcaaatcatc 619

                                                                       
Query: 305 ctgcttccacagatagaaaattagccaagggggaaatactaccagaatggagagcttcgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgcttccacagatagaaaattagccaagggggaaatactaccagaatggagagcttcgt 559

                                                                       
Query: 365 ggtgtcgtactgcattacagagagaacacttgaggacccaaatcattgcagcagcataac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggtgtcgtactgcattacagagagaacacttgaggacccaaatcattgcagcagcataac 499

                                                                       
Query: 425 tactctaggccccagagtcgcacgtgttttagaacatgtcccaagtacagcagattctgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tactctaggccccagagtcgcacgtgttttagaacatgtcccaagtacagcagattctgg 439

                                                                       
Query: 485 cacaaagaacatttttatttgattgtctaaagaaacagaataccagttttaggggggaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cacaaagaacatttttatttgattgtctaaagaaacagaataccagttttaggggggaaa 379

                                                                       
Query: 545 tccacttattaggatagagatgtataaaataattctattcacatttctgccccaaaaatg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tccacttattaggatagagatgtataaaataattctattcacatttctgccccaaaaatg 319

                                              
Query: 605 ggaaaaggaagttgtatatcataaataacaccact 639
           |||||||||||||||||||||||||||||||||||
Sbjct: 318 ggaaaaggaagttgtatatcataaataacaccact 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)