Query= MSMg01no108_m12.b1 MSMg01no108_m12.b1 CHROMAT_FILE:
MSMg01no108_m12.b1 PHD_FILE: MSMg01no108_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:45 2005
(660 letters)
>mm_chr12_15510575_15511635
Length = 1061
Score = 837 bits (433), Expect = 0.0
Identities = 460/469 (98%), Gaps = 1/469 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgac-acatcatgattccagtgaattcctttccaattttcctcaattcaaaat 63
||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 672 gaattcttgacaacataatgattccagtgaattccttcccaattttcctcaattcaaaat 613
Query: 64 caattttaaattgacttatcttgccattaggaatgacatgtttagtacgagggttttaaa 123
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 612 caattttaaattgacttatcttgccattaggaatgacatgtttaatacgagggttttaaa 553
Query: 124 tgctgacagtatgaagtcctttatgatagatgttctgttaagcctcagatcacaaatcaa 183
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgctgacagcatgaagtcctttatgatagatgttctgttaagcctcagatcacaaatcaa 493
Query: 184 acttttaacgacaagatttatggtttttctatttattcagtgaaggtgaaatttcactga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acttttaacgacaagatttatggtttttctatttattcagtgaaggtgaaatttcactga 433
Query: 244 gggagatttagattttgcaaaatgtaagaaaatttggtattctaaaatcttaggcatttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gggagatttagattttgcaaaatgtaagaaaatttggtattctaaaatcttaggcatttg 373
Query: 304 ctattcacagataagaccctgactgagttttaaaactgactatgcactttcacacagtat 363
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 372 ctattcacagataagaccctgactgagtttttaaactgactatgcactttcacacagtat 313
Query: 364 aaatttcctttctttgttctcttgatttacctcctgtgtctgtccttcctctgatcccac 423
|||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct: 312 aaatttcctttctttgttgtcctgatttacctcctgtgtctgttcttcctctgatcccac 253
Query: 424 tttcttcctcatgttcttcttgcttgtgttatatctctctcacctctct 472
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttcttcctcatgttcttcttgcttgtgttatatctctctcacctctct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space: 683150
Effective search space used: 683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_m12.g1 MSMg01no108_m12.g1 CHROMAT_FILE:
MSMg01no108_m12.g1 PHD_FILE: MSMg01no108_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:45 2005
(612 letters)
>mm_chr12_15444055_15445066
Length = 1012
Score = 1147 bits (593), Expect = 0.0
Identities = 612/625 (97%), Gaps = 13/625 (2%)
Strand = Plus / Plus
Query: 1 agaaagaactacaa-ggctgagcttattcagaagtaagcctctgagatgacaattacagc 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 agaaagaactacaaaggctgagcttattcagaagtaagcctctgagatgacaattacagc 247
Query: 60 tggcaaaggaaaggactggactcttggttatcatcagtttgctttttaaaaggtgtgtgt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tggcaaaggaaaggactggactcttggttatcatcagtttgctttttaaaaggtgtgtgt 307
Query: 120 gtgtgtgtgtgtgtg--------gcattatttggaggtgtgg----ccttgttggaatat 167
||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 308 gtgtgtgtgtgtgtgtgtgtgtggcattatttggaggtgtgggtggccttgttggaatat 367
Query: 168 cctttgagtcacaacagaaataaaaactggagacatgaatgacagcaatgcccttaatca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cctttgagtcacaacagaaataaaaactggagacatgaatgacagcaatgcccttaatca 427
Query: 228 gataattataagatatttacaaattgtcattgcttaagcagatatctatatatggaaaca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gataattataagatatttacaaattgtcattgcttaagcagatatctatatatggaaaca 487
Query: 288 aaatcttataagactataacagacagtagcagacttggtatcgatttttctcttttatta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaatcttataagactataacagacagtagcagacttggtatcgatttttctcttttatta 547
Query: 348 aaacatatatgaaaatttgtacatattaaaactttcctaaataacctaccaaattatagc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aaacatatatgaaaatttgtacatattaaaactttcctaaataacctaccaaattatagc 607
Query: 408 cattaaggcaaatttgttatttgtgcatgtgcaggatcaagtgcacatggttgacaatct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cattaaggcaaatttgttatttgtgcatgtgcaggatcaagtgcacatggttgacaatct 667
Query: 468 tggctgctaggccttatatgctgtccacattgttttgattgtttccttttaaaatcagtt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tggctgctaggccttatatgctgtccacattgttttgattgtttccttttaaaatcagtt 727
Query: 528 gttacatttatttatttatttattcattcattcattcatttaattaattatttatttatg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gttacatttatttatttatttattcattcattcattcatttaattaattatttatttatg 787
Query: 588 tgcatgtgtgtcagatcagatgagt 612
|||||||||||||||||||||||||
Sbjct: 788 tgcatgtgtgtcagatcagatgagt 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
