BAC Information

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BAC

Clone NameMSMg01-109D08
Chromosome12 (Build37)
Map Location 41,336,056 - 41,336,596
singlet/doubletsinglet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109D08.T7 (MSMg01no109_d08.b1)MSMg01-109D08.TJ (MSMg01no109_d08.g1)
ACCAG322451AG322452
length790708
length of high quality
(start - end)
---541 (88 - 628)
definitionCHROMAT_FILE: MSMg01no109_d08.b1 PHD_FILE: MSMg01no109_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:20 2005CHROMAT_FILE: MSMg01no109_d08.g1 PHD_FILE: MSMg01no109_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAAAAAATATTAATAATTGCGGTGTTAATCGACTCACTATATTCAGAGG
ATCCGCGGAATTCAGTACCATTTTCCGTTAAAGGAGAAGAGGCAATCGGT
TCACATAGACTTCCCCACAAAAGGATACCAATGGAGCATGATGGAAAGAT
TCTGAACGTCTATAATGACTACTTAATATGTTATATAATATGCCTCATCT
CTGTAATAATGAATATTCGAGACTCTGACAGACCTCATAATTTCCCGCAG
AGTCTCGGCGATAAAATATCCACCTTGTTATTCCGCCTTTCGCACACTTG
TTTTTTATTACCTTCTTCGCCTATTTCCATACACCTCAATTCCCCACGTT
TTACATAAAAATATTTATATTTCCCACTTTTACACGAATTGTATTCTGCC
CGTCGCTTCCGTATATTGTTTTGTCCCATTATCGCCTCTCAAACCCCTTT
GTTTTTAAATAATACAAAAACCCACCCTCTACGTCGTTTCCCCCTTTTCC
TTTTTCCCCGTTTTCCCCCATCTATTCCTCTTTAGCCCTTCCTTTCCACA
TATCTTTTTTTTTTAAAAAAACAACCTCTCCCCTTTCCCTTCCTTTTCCT
TTACCTCTTCCCCCTTTTTATACCTTTCCCCTCCCTCCCCCCATTACCCT
TTACTTCCCCCTTTTCCCCCTTCATTATCCCTTCTCCCTTCGCCCCCTTT
CCTTTCCACACTTTCTTTTTTCTTCTTCTCTTTCCCATATTCCCAAACAC
CCCCTTTCCCCATTTTCCGCCCCCCCCTTTACATTACCCG
CCACATACTNNNNCTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTATTTCTGTG
TAGTAAGTTCTCTATGAAGCCTTTCAGCTCTCTCTCAATTATTATTATTT
TAAACAGAATGCTATTAAATTAGGAAATGCTGCTAGTTTGTTGTGAAAAC
CTTAACGACAAGTTGAGGCAAAACTCACAAAAATTTATGAGCTAACTCAG
GGAGCCGGAATAAAAATGAACATTACCAACTCAGCATTTATTAATTCTAA
ATGAACTTTTAGATTCTTCCTCAGGGTTTTCAGAGGACACCAAGTTTCAC
TGGAACCCTGTTCTCTGCTCTTCCCCTCCCCCAACTGTATAAACCAATGA
AGCAATGGCTTCACTCCTTTTTCTCACCTGCGCATCTCAGCTAACTATCA
CAATCTGGAGTGTCAGTTTTCTAAAGAGTTGAACCACTTTAGAGAGCCTT
GTTAAAACTAACCCTATGCCCAAACAACCCCCTCCCACTGGAATCAAAAT
TAACACCTATAAATAGCCTTTGTCCTCTTTTGTGAAGGAAATCAGATAAG
TTTGAAAATATCTTAAAAACAGACAATAGGGCTGGTTTTAGGGCTGAAAA
CAGCGGCTTATTTCACTGTATGTTAATTAGGAACAATCCATCTACTGTAG
CTCTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_d08.g1 MSMg01no109_d08.g1 CHROMAT_FILE:
MSMg01no109_d08.g1 PHD_FILE: MSMg01no109_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:20 2005
         (541 letters)



>mm_chr12_41335856_41336796
          Length = 941

 Score =  899 bits (465), Expect = 0.0
 Identities = 522/541 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttatttctgtgtagtaagttctctatgaagcctttcagctctctctcaattattatta 60
           ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 tgttatttctgtgaaataagttctctatgaagcctttcagctccctctcaattattatta 682

                                                                       
Query: 61  ttttaaacagaatgctattaaattaggaaatgctgctagtttgttgtgaaaaccttaacg 120
           |||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 681 ttttaaacagaacgctattaaataaggaaatgctgttagtttgttgtgaaaaccttaact 622

                                                                       
Query: 121 acaagttgaggcaaaactcacaaaaatttatgagctaactcagggagccggaataaaaat 180
           |||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||
Sbjct: 621 acaagttgaggcaaaactcacaaaaatttaagagctaactcagggaactggaatgaaaat 562

                                                                       
Query: 181 gaacattaccaactcagcatttattaattctaaatgaacttttagattcttcctcagggt 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 gaacattaccaactcagcatttattaattctaaatgaactttttgattcttcctcagggt 502

                                                                       
Query: 241 tttcagaggacaccaagtttcactggaaccctgttctctgctcttcccctcccccaactg 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 tttcagaggacaccaagtttcactggaaccctgctctctgctcttcccctcccccaactg 442

                                                                       
Query: 301 tataaaccaatgaagcaatggcttcactcctttttctcacctgcgcatctcagctaacta 360
           |||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||
Sbjct: 441 tataaaccaatgaagcaatggcttcactcctttttctcaattgtgcatctcagctaacta 382

                                                                       
Query: 361 tcacaatctggagtgtcagttttctaaagagttgaaccactttagagagccttgttaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tcacaatctggagtgtcagttttctaaagagttgaaccactttagagagacttgttaaaa 322

                                                                       
Query: 421 ctaaccctatgcccaaacaaccccctcccactggaatcaaaattaacacctataaatagc 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ctaaccctatgcccaaacaaccccctcccactggcatcaaaattaacacctataaatagc 262

                                                                       
Query: 481 ctttgtcctcttttgtgaaggaaatcagataagtttgaaaatatcttaaaaacagacaat 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ctttgtcctcttttgtgaaggaaatcagataagtttgaaaatattttaaaaacagacaat 202

            
Query: 541 a 541
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)