BAC Information

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BAC

Clone NameMSMg01-109H17
Chromosome12 (Build37)
Map Location 46,998,968 - 46,999,189
singlet/doubletsinglet
Overlap genenone
Upstream geneStxbp6
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109H17.T7 (MSMg01no109_h17.b1)MSMg01-109H17.TJ (MSMg01no109_h17.g1)
ACCAG322656AG322657
length725731
length of high quality
(start - end)
53 (254 - 306)223 (71 - 293)
definitionCHROMAT_FILE: MSMg01no109_h17.b1 PHD_FILE: MSMg01no109_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:43 2005CHROMAT_FILE: MSMg01no109_h17.g1 PHD_FILE: MSMg01no109_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGTCTAAATTTGCGGCGCTAAACGAGGCANATTTCGGCACCCGCCGCGG
AANCACNCATTTTCCGCACCGGGCGCAACAGNAGNNCAACANAAGGGNGG
ACGACNAAAGNCAGAAGGCCCCCNGCCCGGANCAACACACGAAAGGAGAA
AGAGCAGGGCAAGCGGCACAGCACACCAAGCCACAACGCCCACACCCACA
AACCAACGACAACCGAGACCAACAACCCAGGGCCAGCACGAGGAGCAATT
TATTTAAAGCATTTGCAACTCTGCACAATGGTTGACATGTGATAACTCAA
TAAGCATCGAACTTTTTTTTTTTTCAGGAGAAGAAAAGAAGCAGAAGCCA
GAGGCATAGTACCCCCCCCCCCCCCACACCCCAACGGCCCAACATCNACA
GNAAGGNACCCCGGCGAGCGAACAACTGAGCTAACACTAGAACATTGAAG
GACTATCACAGATGTCACAATCACTTTGGCAGAGACCTATTTTATAGCAC
AGAAAACTATCTTTACAGATTAAAACTAACTAATTAATACATAACTCCCA
TACAATAAACTAGAACTTGAATTGCTATAAAAATTCTACACAAATTTCGG
ATAGCGAAAGATCTGAGCATCACCTAAACTATTAACCACTGACATTCAAC
TTTTTTTTTTTTTTTTACACCAACGCAAACAATTCCAATTTACACAGTCT
ATATTACAATGAAGTGTAAGATTTA
NCTCGATGATGTGGGAGGCCTGGCGGCGCCTGTTTCTAACTATGAGGTGA
CCTATAGAAGTTCCGCGAAATTCTGTCACACCATCAAAACAGCTAACTAA
ATTAAACAATTATCTCCTTTGCCATTGAATTTTATTTCTGATGAAAAAAT
TACAAACTGAACAGGAGCATCTAATGAATGACTTCGTTAAGTTTAATATT
TATTCTTTGGGTAAACTTTTGTAAGAAAAATGTATAAAATTCATTTGAGC
TCTTATCAGATCTCTTGCTCTAAAATGTAATTCTTATTGGAGCTGTCTGG
ATCGGAGCTATAGTATTTATTTTCTATAAGTCTGTGTAAATTTGCCAGTT
GTGTCTTGTTTTATTTCATCCACACATTCCATATGCTATACCTATAACTT
AAGTAGTAAATTCCATGAACGATCTATCTTACAGGTCTAAGATTTCGCAC
ACCACTGTGATATTCATCTTTCCACTTTGTGCTCATTATGTTTCCTTTAT
TATATACTATATTCGAATATATGATATGAATCCATCTTTATCACTGACCT
TTTGAACCTAATTTATATATTGATAATGACATCTTATATCTCCCCTCTAA
TTTATATTATCTTTTAATCTGTACGTATGTTAAATACATACTAAAAATCT
TTATTATATTATATTTTATAAAATATATAAATATATTTTACTATTGTTTT
TACATAACAATAAATATTTATATATCACAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_h17.g1 MSMg01no109_h17.g1 CHROMAT_FILE:
MSMg01no109_h17.g1 PHD_FILE: MSMg01no109_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:43 2005
         (223 letters)



>mm_chr12_46998768_46999389
          Length = 622

 Score =  400 bits (207), Expect = e-116
 Identities = 219/223 (98%), Gaps = 1/223 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgtcacaccatcaaaacagctaactaaattaaacaattatctcctttgccattgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgtcacaccatcaaaacagctaactaaattaaacaattatctcctttgccattgaat 260

                                                                       
Query: 61  tttatttctgatgaaaaaattacaaactgaacaggagcatctaatgaatgacttcgttaa 120
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tttatttctgatg-aaaaattacaaactgaacagaagcatctaatgaatgacttcgttaa 319

                                                                       
Query: 121 gtttaatatttattctttgggtaaacttttgtaagaaaaatgtataaaattcatttgagc 180
           ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 320 gtttaatatttattctttgggtaaacttttggaagaaaaatgtataaaatgcatttgagc 379

                                                      
Query: 181 tcttatcagatctcttgctctaaaatgtaattcttattggagc 223
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcttatcagatctcttgctctaaaatgtaattcttattggagc 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 622
Length adjustment: 9
Effective length of query: 214
Effective length of database: 613
Effective search space:   131182
Effective search space used:   131182
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)