BAC Information

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BAC

Clone NameMSMg01-109N01
Chromosome12 (Build37)
Map Location 115,668,126 - 115,668,358
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510
Downstream geneIghv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109N01.T7 (MSMg01no109_n01.b1)MSMg01-109N01.TJ (MSMg01no109_n01.g1)
ACCAG322904AG322905
length769746
length of high quality
(start - end)
237 (49 - 285)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no109_n01.b1 PHD_FILE: MSMg01no109_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:10 2005CHROMAT_FILE: MSMg01no109_n01.g1 PHD_FILE: MSMg01no109_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTGGAAGACACAAGCTTTCACTCTCCTTGAGAGATTCAGGC
TTTCTCATCTGTAATGACACCTGAAACTGTAAATTGTGCAGACAATTCAA
ACCTAAGTACAACTCAATGTTTATACTAATCATGGTCTTTCTTTTGCTGA
TTCCCCTAAATTCACAAGGAAAGGAATTACTCTGGTTTGGTTTTGTTGTT
GTTGTTGTTGTTGTTTTGTTTTCTTTTGTTTTGTCTTGTTTTTCGAATCT
CCCCCCTCAACCATACCTTTATTCTTTTTTTCTCTCTCTTCTCTCTTTAT
TTTTATTTCTTTTTTTTCTTTTTTTTTCCTTTCCTCTCCGTTTTTCTCTC
TTTTTTCTTCTCTTTTTCTTCCTCTTCCTTCTTTATTTTCTTTTTTTTTA
CTTTTCTCTCTTCTTTCTTATTTATTCTCTCTTTTTTTCTCTTTTTTCTT
CTATTTCTTAATTTATTTCTTATATTTCCTCTTTACACCCTCACAATCTG
CTACCTCTACACCATTTCATTCAAATCTTTAATTCCACCTCTCTTATATA
TATTGCAATAATAATCACCACCTCTTATCTCACCCTCAATCTCTTCATCC
TTATCCTCCACTCCCACTCCCATTCTCTTCGCTTCTATACCTTATTTATT
AATCTATATATGTTATTTTTTTTATTCTTATTTTACTTCTTATCTTCTTC
ATTTTTTACTTCTTCTTTC
CAACGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCTATTT
TTAATGGGGTTATTTGATTTTCTGGAGTCCATCTTCTTGAGTTCTTTATA
TATATTGAATATTAGTACCCTATCTGATTTAGAATTGGTAAAGATACTTT
CCCGATCTGTTGGTTGCCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTT
ATAAAAGCTTTGCAGTTTTATGAGGTCCCATTTGTCGATTCTTGAACTTA
CAGCACAAGCCATTGCTGTTTTGTTCAGGAATTTTTCTCCCTGTGCCCAT
ATCTTTGAGGTTTTCCCCAATATGCACTCACTGATAAGTTGGTATTAGCC
CCCAAACTTAGAATACCCAAGATACAATTTGAAAAACACACGATACTCCA
GAACACGGAATACTTTTTTGTGTATCCTCCTTCCCTTCCTTAACATGGCC
CACTATATACTTCTTGGTATGCACTTCCAGCAGATCATGTTTCTGCCCTC
AATTTTCTTCGCTACGACTCTCTCTTTACCTACCCTCACCCGGTCTTCCC
TTTCCTTATTCTATTTCCCTCCTCCACTGCTTTTTTTTCATTTTTTCTCC
TCCACTTTTGCCGACTTTATACCTGTATTTTTCATGTTTCTTTGATTCCT
CATAGGTTGTGATCTTGAAACTTTATATATTTATTTTATTTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_n01.b1 MSMg01no109_n01.b1 CHROMAT_FILE:
MSMg01no109_n01.b1 PHD_FILE: MSMg01no109_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:10 2005
         (237 letters)



>mm_chr12_115667923_115668559
          Length = 637

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtggaagacacaagctttcactctccttgagagattcaggctttctcatctg 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtggaagacagaagctttcactctccttgagagattcaggctttctcatctg 263

                                                                       
Query: 64  taatgacacctgaaactgtaaattgtgcagacaattcaaacctaagtacaactcaatgtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taatgacacctgaaactgtaaattgtgcagacaattcaaacctaagtacaactcaatgtt 323

                                                                       
Query: 124 tatactaatcatggtctttcttttgctgattcccctaaattcacaaggaaaggaattact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatactaatcatggtctttcttttgctgattcccctaaattcacaaggaaaggaattact 383

                                                                
Query: 184 ctggtttggttttgttgttgttgttgttgttgttttgttttcttttgttttgt 236
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctggtttggttttgttgttgttgttgttgttgttttgttttcttttgttttgt 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)