BAC Information

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BAC

Clone NameMSMg01-109O23
Chromosome12 (Build37)
Map Location 103,350,307 - 103,350,640
singlet/doubletsinglet
Overlap genenone
Upstream gene4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2
Downstream geneSlc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109O23.T7 (MSMg01no109_o23.b1)MSMg01-109O23.TJ (MSMg01no109_o23.g1)
ACCAG322993AG322994
length735702
length of high quality
(start - end)
340 (84 - 423)294 (86 - 379)
definitionCHROMAT_FILE: MSMg01no109_o23.b1 PHD_FILE: MSMg01no109_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:20 2005CHROMAT_FILE: MSMg01no109_o23.g1 PHD_FILE: MSMg01no109_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATATTCTTNNNNTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCAGCAGCTTTCTATCCATGCAGACGTTAATG
GGACAATTGACTAACCTGGCAGTGTGGACAATCCATCAGCAATGGAGGAG
CTTTAACTTCCTAGTAACTAGACTCGGACATTACAGACACTGTGACCCAT
TTAAGCCATCCATAATACTGTGCAAAACCAGACCTCTGGCTTCCTTCAGA
TTTCCTTATTTGTGACATGGCATATTGTCCCACAGTCTCTTTCCCACTGG
AAATTGGGAGGGGGCAATGACGTTGGGCTCTCTGGTTCTTTTCAAATGAG
TCCCCTGGCAACAATACGTGAGAACATTGCATCTGGAGATCCAACTCTTA
GCGCGGGGGGGGGGGGGTAGGGTTTCCCCCCCCTTCTTCTCTATCTCTCT
TTCTTCTCCCCTTACTTCCCCCCCTTCTCCGCTTTCACTTTTCCTTCCTT
CTCTCCCCCCTTTTTCTATACCTTCATCCCTCTCTTTTTTTTCCCTTTCT
ATATCTCCTCCTTCTTTCTCCTCTCTCATTTATCCCTCTATCTACTCATT
TCCCCCTCCTCATTTTCCGCTTCCTCCCTTGTTATATTCTCTTCCCCCCT
CTCCTACACCCCCCCAAATCACCCCTCTTCCTACACCTCTTCCCTTTCTT
TTCTTATCCCCTCTTCTCCCTCCCCCCCCTTCCCT
NCCACGTAAATTNNCACGATGAAGTGGGAGGCCTGGCGGCCGCCTGGTTC
CTCAGTGGAGGTGAACTATAGAAGTTTCCACAAAATTCTCTCTCCCTGGA
CTAGTCAGAAAGAATTGAAATGGGAACTGGAAAAGGGGATAACATTTGAA
ATGTAAATGAAGAAAATATCCAATAAAAAAAAAAGAAAAAGAAAGAATTG
AAATGTAATTGTGTGACATGACAACCCTAGTGATATGTTTGTATTTGTGT
GTGTGTACACATGTGTGGGTGCATGTGTGCATGTATGTGGGTATGTGTAG
AGGTCAGAGGACAGTCGTGGCTGTCATTCCTCTTTTTTTATTCACCTTAT
TTTTGAGACAGTCTCTCACTGAACATGAAATACCCCAGCTTGCCTAAGAT
GGATGTCCAGTCCCTAAAGATTTGCTTGTCTCTGCTTTCCCTAGGATGAA
ATTACAATTGGGCATCACCATGACCCCTTCTTTTGATCACATGGGTGCTT
GGTCAAGCCATAACTGACAAGGGTCATTTCCCAGGTCCCCTGGTGACCCC
TTACTTGTTCAGGATAAAGCACTACAGTGGTTGCAGTTGCTCTTGCTTTG
GCGCATCTTTAAGTATATACATGTCCTTGGCTTGCCCCTCACCCTGTAGG
TCTAGTAACAGGGATATGTGCCCATTATGGTTGACCTGCTTGAAATGACC
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_o23.b1 MSMg01no109_o23.b1 CHROMAT_FILE:
MSMg01no109_o23.b1 PHD_FILE: MSMg01no109_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:20 2005
         (340 letters)



>mm_chr12_103350107_103350846
          Length = 740

 Score =  594 bits (307), Expect = e-174
 Identities = 328/335 (97%), Gaps = 2/335 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatgcagacgttaatgggacaattgactaacctggcagtgtggacaatccatcagcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatgcagacgttaatgggacaattgactaacctggcagtgtggacaatccatcagcaat 260

                                                                       
Query: 61  ggaggagctttaacttcctagtaactagactcggacattacagacactgtgacccattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggagctttaacttcctagtaactagactcggacattacagacactgtgacccattta 320

                                                                       
Query: 121 agccatccataatactgtgcaaaaccagacctctggcttccttcagatttccttatttgt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 321 agccatccataatactgggcaaaaccagacctctggcttccttcagatttccttataagt 380

                                                                       
Query: 181 gacatggcatattgtcccacagtctctttcccactggaaattgggagggggcaatgacgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gacatggcatattgtcccacagtctctttcccactggaaattgggagggggcaatgacat 440

                                                                       
Query: 241 tgggctctctggttcttttcaaatgagtcccctggcaacaatacgtgagaac-attgcat 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 441 tgggctctctggttcttttcaaatgagtcccctggcaacaatacgtgagaaccat-gcat 499

                                              
Query: 300 ctggagatccaactcttagcgcggggggggggggg 334
           |||||||| ||||||||||||||||||||||||||
Sbjct: 500 ctggagattcaactcttagcgcggggggggggggg 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)