BAC Information

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BAC

Clone NameMSMg01-110D17
Chromosome12 (Build37)
Map Location 31,808,443 - 31,809,054
singlet/doubletsinglet
Overlap geneLOC668781
Upstream geneTpo, Sntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik
Downstream geneLOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110D17.T7 (MSMg01no110_d17.b1)MSMg01-110D17.TJ (MSMg01no110_d17.g1)
ACCAG323211AG323212
length709688
length of high quality
(start - end)		627 (63 - 689)614 (75 - 688)
definitionCHROMAT_FILE: MSMg01no110_d17.b1 PHD_FILE: MSMg01no110_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:45 2005CHROMAT_FILE: MSMg01no110_d17.g1 PHD_FILE: MSMg01no110_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAACCACTNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCCCAGCCCTAGCCTGGAGTCTGGAGACAG
CAAGAGTAGGGGCTGAGGGCGTGGGGCCCAGGGGCCCAGTGTAGATGACG
TTTGCCCCTGGCCCTGACCTGCCTTCCCAACAGCTTTGGCCTCCCCACTC
CTTGTGCACTCCTCTGCTGTCACTGCAGACACTCCACTTGCCACCTTGTA
TTCTGCAGTCTCCAGGCCTTTTGCTATAGTGCCCACCTGAATGTCAGTAA
ACAGCAGCTGATGCAAAACAACAACAACAACAACAACAACAACAACAACT
TTTCCTCCACAACTTTTTCTTGGTCATTGTGTTTTAACACTGTAATTCTA
AGACAGACATGAAATAGAGTTATTTATATCAAATAATTTGTGTCAAGTAC
ACGATATCCCTCAATGCAGTAAGCACTCAATGATACAATTATGGTCATGA
GATAATTGAAACAGAAGACTGTGGCAAACGACTACAGCACCATTCCCAGA
CTCTAAAAGCCCAGAACTGTGCATGAAGTGTGAGTGATTAAAGCACTTAA
GGGACAATATTGCTCCTTGTCCTTGCTTGCCAGTGCAGGTGCTGCCTTTG
AGTCAACAAAGTCCTCATTCCTTACATGGATCAGGGCCACCAACTGTCCC
TGCATGGGC

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGTAGAGCCAGGCGCAGAAAGAT
CTGCTGGGGGAGATGTGAAGAGTTGGATGCATGGTACCTGAACACAGGTA
ACTGGCCATGTGGCAGAGTCTGAGACTTTATATCTGAGAGCATCAGGCTG
GGAGGCAGAACCAGGTCTAATGTCTACAGGAGGGCAAGGAAACTTTGGAT
CTGCTTCTGTAACATCTAGCCTCATGATCATGAGAACTGTAAGGATTGTG
AAAATGCATGTTGTTTGCTACACACAGTAATCTCAAGAGAGATGAGAGGC
TCTGCTCTCACATAATCCTCCATCTTGGCAGTTTGCTCCAGAACAGGACT
CCTCTAAATCCACTTATGCAGACACGGTCCGGCTTCAGAAAGACTCCAAA
GGAGCCCTGTCACAGAGCCATAGCTGACAAGCCCCTTCTGTATTAGGGCC
ACATCTCATAGTCTGGATGCGAAGAATGGATTGGGAGTGACTCTGTGGCA
AGGATCTTGAGGACTGATTTGGGAGTTGACTTGAGAACACAAATGTAACA
ACTGCACGAACTGGATGAGCAGAAATAAATTAATACTTCATTTCTAAGAT
AGGCGAGTAGATCTTGGATTTGATCCATATTTGGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_d17.g1 MSMg01no110_d17.g1 CHROMAT_FILE:
MSMg01no110_d17.g1 PHD_FILE: MSMg01no110_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:45 2005
         (614 letters)



>mm_chr12_31808089_31809102
          Length = 1014

 Score = 1145 bits (592), Expect = 0.0
 Identities = 607/612 (99%), Gaps = 1/612 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggtagagccaggcgcagaaagatctgctgggggagatgtgaagagttggatgcatgg 60
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 966 cagggtagagccaggcacagaaagatctgctgggggagatgtgaagagatggatgcatgg 907

                                                                       
Query: 61  tacctgaacacaggtaactggccatgtgg-cagagtctgagactttatatctgagagcat 119
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 906 tacctgaacacaggtaactggccatgtggccagagtctgagactttatatctgagagcat 847

                                                                       
Query: 120 caggctgggaggcagaaccaggtctaatgtctacaggagggcaaggaaactttggatctg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 caggctgggaggcagaaccaggtctaatgtctacaggagggcaaggaaactttggatctg 787

                                                                       
Query: 180 cttctgtaacatctagcctcatgatcatgagaactgtaaggattgtgaaaatgcatgttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 cttctgtaacatctagcctcatgatcatgagaactgtaaggattgtgaaaatgcatgttg 727

                                                                       
Query: 240 tttgctacacacagtaatctcaagagagatgagaggctctgctctcacataatcctccat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tttgctacacacagtaatctcaagagagatgagaggctctgctctcacataatcctccat 667

                                                                       
Query: 300 cttggcagtttgctccagaacaggactcctctaaatccacttatgcagacacggtccggc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cttggcagtttgctccagaacaggactcctctaaatccacttatgcagacacggtccggc 607

                                                                       
Query: 360 ttcagaaagactccaaaggagccctgtcacagagccatagctgacaagccccttctgtat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttcagaaagactccaaaggagccctgtcacagagccatagctgacaagccccttctgtat 547

                                                                       
Query: 420 tagggccacatctcatagtctggatgcgaagaatggattgggagtgactctgtggcaagg 479
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tagggtcacatctcatagtctggatgcgaagaatggattgggagtgactctgtggcaagg 487

                                                                       
Query: 480 atcttgaggactgatttgggagttgacttgagaacacaaatgtaacaactgcacgaactg 539
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atcttggggactgatttgggagttgacttgagaacacaaatgtaacaactgcacgaactg 427

                                                                       
Query: 540 gatgagcagaaataaattaatacttcatttctaagataggcgagtagatcttggatttga 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gatgagcagaaataaattaatacttcatttctaagataggcgagtagatcttggatttga 367

                       
Query: 600 tccatatttggg 611
           ||||||||||||
Sbjct: 366 tccatatttggg 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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