BAC Information

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BAC

Clone NameMSMg01-110J05
Chromosome12 (Build37)
Map Location 103,830,593 - 103,830,948
singlet/doubletsinglet
Overlap geneItpk1
Upstream gene4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga
Downstream geneMoap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110J05.T7 (MSMg01no110_j05.b1)MSMg01-110J05.TJ (MSMg01no110_j05.g1)
ACCAG323466AG323467
length750702
length of high quality
(start - end)
361 (57 - 417)387 (55 - 441)
definitionCHROMAT_FILE: MSMg01no110_j05.b1 PHD_FILE: MSMg01no110_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:12 2005CHROMAT_FILE: MSMg01no110_j05.g1 PHD_FILE: MSMg01no110_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTCTCTTGTGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCACTGTATGTCTGTGTGACTAGGGAAAACCACAGG
AAACACAGCATCCAGTAGTGCCTGAGGTTTCAACCACCTCCTGGGGTATC
AGAATGTATCCTCTCTGGATCAGGGGTAGGGTGGCTGGAGGTGAAACCAC
GCCATCATCTCAATATATGTTTATAAAAGCATTTGAGGGGCTAGAGAGAT
GGTCTGGGAAGAGGCACGGACTGCCCTTGAGGAGGGCCAGGGTTCAGTAC
GTCGTAGCTTACAACCATTTTCAACTCCAGGTCCAGGCAATCCAATGCCT
CTCTGATCGCCACAGGCACCAGGCATGCATGAAGTACAAAGACATATACG
CAGGCAAAATGCTCACTCACATTAAAAAACAATAACAACAACTAAAAAAA
AACCCAACAACTTCAGGTGTTTCTCCCCACCCCCACCCCCATTGAACCTG
AGGTGAGAGCAGAAAATGTTGAGAGTCCATCTCTTCCCAGAAGTGTCACT
TTCCAGAGAACAGGCGACATCCAGCTTTGGGTATGACTAAAATCCTGCCT
TTCCAATTCCTCAAGTACTCAAGTAGAGCCTATTAGAGTAAGAGGTGCCC
TATAAAGACGGATTTGCCCCGCCCTAGGGATGTCCCCAGTTCCTTTTTAA
TTAATTTAGAGATGGTTGGCAAATCTTTCGAAATGTTACATCCTCGTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATTCATTCTGTGCTTTGTGAAAATGCTGTCTTCATTAATAATCTCA
TTACTATTGTTAGCTAACATTCCTGATTTCCCCCCTTTTCACATATTTCG
GGCTTGAGATGAAGCTCAGCCGGTAGAATGCTTACCTAGCGTGCATGAGC
CAGCACCTGGGGCTGATCTGCACCACATAAAACCTGGGTGTGGTGGTGCA
CACTCCCACAACTGCAGCGGTCTCGAGGTGGAGGCAGGATGGCCAGAGGT
TCAAGGTTGGCTACACAGTGTTCAGAGCCATCCTGGGTTATGTAGCCCTG
TCTGACTTAGAATTTGCTTTGTAGTTCAGGCTGGCCTCTAACTTACAGAG
ACCTGTCTGTCTCTGCTTCTAAGTGCTGAGATCTAAGGTGTGCACCACCA
AGACCCCCCTCCCCACACCCCTCTTAACATACAGGCACATGATGCAAAAT
TTCAGAGGGCCCAAAGCACATAATGAAAAAGTCAGCTTGACCCTTCTTGG
CCCTGAGCTCAGCTGCTCAAGGAACTCAACAGGCTGTCTCCATGGGCGCT
GATGTTACCAATGGGCACCCTGTAGCCCGTCCCCGCTCCTATAGTGTCCC
TTTATGTCTGTTTTTGCATATCCTTGTTTAATTCCCCCCTGCCGCTTCCT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_j05.b1 MSMg01no110_j05.b1 CHROMAT_FILE:
MSMg01no110_j05.b1 PHD_FILE: MSMg01no110_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:12 2005
         (361 letters)



>mm_chr12_103830389_103831149
          Length = 761

 Score =  621 bits (321), Expect = 0.0
 Identities = 348/357 (97%), Gaps = 2/357 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgtatgtctgtgtgactagggaaaaccacaggaaacacagcatccagtagtg 64
           |||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattcactgtaggtatgtgtgactagggaaaaccacaggaaacgcagcatccagtagtg 264

                                                                       
Query: 65  cctgaggtttcaaccacctcctggggtatcagaatgtatcctctctggatc-aggggtag 123
           |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct: 265 cctgaggtttcaaccacctcctggggtatcagaatgtatcctctttggatctaggg-tag 323

                                                                       
Query: 124 ggtggctggaggtgaaaccacgccatcatctcaatatatgtttataaaagcatttgaggg 183
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtggctggaggtgaaatcaccccatcatctcaatatatgtttataaaagcatttgaggg 383

                                                                       
Query: 184 gctagagagatggtctgggaagaggcacggactgcccttgaggagggccagggttcagta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctagagagatggtctgggaagaggcacggactgcccttgaggagggccagggttcagta 443

                                                                       
Query: 244 cgtcgtagcttacaaccattttcaactccaggtccaggcaatccaatgcctctctgatcg 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 cgtcgtagcttacaaccattttcaactccagttccaggcaatccaatgcctctctgatcg 503

                                                                    
Query: 304 ccacaggcaccaggcatgcatgaagtacaaagacatatacgcaggcaaaatgctcac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccacaggcaccaggcatgcatgaagtacaaagacatatacgcaggcaaaatgctcac 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)