BAC Information

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BAC

Clone NameMSMg01-111A12
Chromosome12 (Build37)
Map Location 63,711,931 - 63,712,627
singlet/doubletsinglet
Overlap geneLOC100040438
Upstream geneLrfn5, LOC665707, LOC100040403, LOC665713, LOC622746
Downstream gene1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111A12.T7 (MSMg01no111_a12.b1)MSMg01-111A12.TJ (MSMg01no111_a12.g1)
ACCAG323804AG323805
length1,1851,178
length of high quality
(start - end)
269 (119 - 387)697 (77 - 773)
definitionCHROMAT_FILE: MSMg01no111_a12.b1 PHD_FILE: MSMg01no111_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:50 2005CHROMAT_FILE: MSMg01no111_a12.g1 PHD_FILE: MSMg01no111_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTGCTATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
TCTGTTTAGCTCACCCCATAAATAGTCAATTAGGNNATTTGTGTTTTTTT
CATGCCCTTTAACCTGAGCTCTTTATATATTTTGAATATTAAGTCTCTAT
TAGATGTAGAGATAGGGAAGATTTTTTCCCAATTTGTAGGTTGCTGACTT
TTCCTATTGATGCTATCTTTTTCTTTATAGAATCTTTTAAGTTTCATGAG
GTCCATTGGAGTTCTGTTGAAGAAATTTCCCCCTGTGCCAATGAGTTCAA
GGCTCTTTTCCACTGTCTTTTAGATTAGAATCAGTGTATCTGGTTTTATG
TTGAGGTTCTTGATCTACTTTGACTTGAACTTTGTGCATTTTTTTTTTTA
TGGATCTATTTTCAGTCTTCTACATACAGACTGAGACAAAATTGTTTAAA
CCACCTCCTTCACAATAGCCACAAATAGTATAAAATATTTTGGTGTAACT
CTTACCAAGCAAGTCAAAGATATCTATGACAAGAACTTCAAATCCCTGAA
GAAAGAAACCAAAGAAGACTTCAGAATATGGAAAGATACTCCCATGCTCA
TAGATTGTGTGGATTAACATAGTGAAAATGGCCATCTTAGCAAAAACAAT
CTATAGATTCAATGCAATCCCCATCAAAATTCCAACACAATCCTTCATAG
ACATGGAAAGAGCATTTCTCAACTTCATATGGAAAAACAAAAAATCCTGG
AGAGCCAATATCATTTTTCATAATAAAAGATCTTCTGTNGAAGTCACCAT
CCTTGACCTTTTGCTGTACAACAGACCAGTAATAATAATGAATACTTGGT
ACTGGTCCAGAGACGGATAGGTTGATCAATGGAACCGAATTGAAGAACCC
AGAAATAAACTTACATACCTGGTAGAATCTTGAAATTTGACAAAGAAGCC
AAAAACCCTTCTGTGGACCTTAAAACCTGTCACCCCTTATAAGGTAAAAT
TTTTTTTTGGGGGCTTGGTTTTTGTTTAAAAGGCTTTAATTATTTTTTCC
TCTCCGGTGGGAAAGCTTTGGCACGTTTTGTTGGGTTTAACTTGATGTTG
GTGAGAATTTCTTCTGTAAATTTCCTTTACTCTTTTTACCTCCGGGTGTT
GTATATACTGTTAATATTACTTGTTGTTCCCTTTT
TTTTTNTTTTCATGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTTTTAATTTTTTTCCTTAGGAAACCTAAG
GTAAAATCTGACATTATGGAATTTGGATCATTGATAAGATTCCATTGGAA
GACAACAGAATATTGTCAGCTTATGAAAGTAGAACAGTTGAATAAATCTT
TTACTTTTTTAATGTTTAAATTTTGTTGTCATTTACAGGTATGTGTGTTA
GTGAAGTCCACATGATTGCAGATGCCTGTAGAAGCAAGAAAGGCATGTCT
GATTCCTTCAGGCTTGATTTACCCAAATTGTAAGTGGCCCAACTTGGGAT
CTGAAGTTGGATCTTTTGCAATAGCAGCAATCATCCCTAACTGCTACTCA
TCCTTAACCGCCAAACTCTTTTGCCAGCTCAGAAAGCCTATTTTAATTAG
GTATTCCAAGGTGACTTCAGGGAAATTTACATAGAAGTGAAAAAGACAAT
ACACAATAATGCATACCAACCAACCAAACAACAAACAAAGCAAGCAAGCA
AGCAAGCAACCAATCAATCAACCATACAACCCAAAATGTATTATGTCACA
TGCAGCTTTATTTATATATAAGAGAGTATTTTACATATGACAGCATCTAA
TACAATAAAAGCTCATTTTCTAATTGAAGAATCCAAATTGGTCAGTATTC
ACAAAGTTTATATAAAATAGTTAGAATCACTTTTCTTGAATCAAATTTCA
ACTCAGTGTAAACACTAACAAGTGTGATGAATGTTTAAAAGTACGTAAAG
GTGTTTACTTGGTCTCTAACATGAGATGAAATACTGCATATGTAGTCTAA
ATACATAAGAAATCTGAAGGTTAAAAGCATACAAAACATTGGTCTCCATG
AAGAAAGCTTTATGTTGAACACTTATGACCTGACTTCCTACCTTTTTTGA
ATTGCTTTTGAAGCCCCATCTCCTTAATAGATCGGTTGAATGCAAAAGCT
CTGAAAAGACTGCTTTCATTCCACGCCGGGGACATGGGGCTTAATGGGTG
TCCGCCCTCCTTGTGGAGGGAACCTTATCATAAAACAACCGGGTTCTTCC
TGGGGCGGTTTGGGGGTAAAACAGCCCTAAATCCCTGTTGGTTGTCCAAA
TGGCCCCCCCTTGATACCTCTTTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_a12.g1 MSMg01no111_a12.g1 CHROMAT_FILE:
MSMg01no111_a12.g1 PHD_FILE: MSMg01no111_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:50 2005
         (697 letters)



>mm_chr12_63711731_63712827
          Length = 1097

 Score = 1324 bits (685), Expect = 0.0
 Identities = 694/697 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttttccttaggaaacctaaggtaaaatctgacattatggaatttggatcattgata 60
           ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 201 atttttttccttaggaaacctaaggtaaaatctgagaatatggaatttgaatcattgata 260

                                                                       
Query: 61  agattccattggaagacaacagaatattgtcagcttatgaaagtagaacagttgaataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agattccattggaagacaacagaatattgtcagcttatgaaagtagaacagttgaataaa 320

                                                                       
Query: 121 tcttttacttttttaatgtttaaattttgttgtcatttacaggtatgtgtgttagtgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttttacttttttaatgtttaaattttgttgtcatttacaggtatgtgtgttagtgaag 380

                                                                       
Query: 181 tccacatgattgcagatgcctgtagaagcaagaaaggcatgtctgattccttcaggcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccacatgattgcagatgcctgtagaagcaagaaaggcatgtctgattccttcaggcttg 440

                                                                       
Query: 241 atttacccaaattgtaagtggcccaacttgggatctgaagttggatcttttgcaatagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttacccaaattgtaagtggcccaacttgggatctgaagttggatcttttgcaatagca 500

                                                                       
Query: 301 gcaatcatccctaactgctactcatccttaaccgccaaactcttttgccagctcagaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaatcatccctaactgctactcatccttaaccgccaaactcttttgccagctcagaaag 560

                                                                       
Query: 361 cctattttaattaggtattccaaggtgacttcagggaaatttacatagaagtgaaaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctattttaattaggtattccaaggtgacttcagggaaatttacatagaagtgaaaaaga 620

                                                                       
Query: 421 caatacacaataatgcataccaaccaaccaaacaacaaacaaagcaagcaagcaagcaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caatacacaataatgcataccaaccaaccaaacaacaaacaaagcaagcaagcaagcaag 680

                                                                       
Query: 481 caaccaatcaatcaaccatacaacccaaaatgtattatgtcacatgcagctttatttata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaccaatcaatcaaccatacaacccaaaatgtattatgtcacatgcagctttatttata 740

                                                                       
Query: 541 tataagagagtattttacatatgacagcatctaatacaataaaagctcattttctaattg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tataagagagtattttacatatgacagcatctaatacaataaaagctcattttctaattg 800

                                                                       
Query: 601 aagaatccaaattggtcagtattcacaaagtttatataaaatagttagaatcacttttct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagaatccaaattggtcagtattcacaaagtttatataaaatagttagaatcacttttct 860

                                                
Query: 661 tgaatcaaatttcaactcagtgtaaacactaacaagt 697
           |||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgaatcaaatttcaactcagtgtaaacactaacaagt 897


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)