Query= MSMg01no111_g22.b1 MSMg01no111_g22.b1 CHROMAT_FILE:
MSMg01no111_g22.b1 PHD_FILE: MSMg01no111_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:45 2005
(326 letters)
>mm_chr12_35070610_35071335
Length = 726
Score = 574 bits (297), Expect = e-168
Identities = 318/331 (96%), Gaps = 12/331 (3%)
Strand = Plus / Plus
Query: 1 cccttgatcatttatatcataattataagaggcaaataatcttgggaggcacaaatatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccttgatcatttatatcataattataagaggcaaataatcttgggaggcacaaatatcc 260
Query: 61 catgtgaatggcactgaaacagagacaatggctagttaactcaccaggtaggattaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtgaatggcactgaaacagagacaatggctagttaactcaccaggtaggattaataa 320
Query: 121 tattatactatgcatttcataggttttgcaaaaattcagtgaaaaactgcataccaagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattatactatgcatttcataggttttgcaaaaattcagtgaaaaactgcataccaagta 380
Query: 181 cataaagtagaggttccttctaaactttctaaggattattgacaattcaaacatatcgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataaagtagaggttccttctaaactttctaaggattattgacaattcaaacatatcgtt 440
Query: 241 caagtttttttgtttgtttgtttgtttgtttttactttttt----tg----ccaactatt 292
||||||||||||||||||||||||||||||| | |||| || |||||||||
Sbjct: 441 caagtttttttgtttgtttgtttgtttgtttgt----ttttaccatggaggccaactatt 496
Query: 293 gaactcagtactggtttagacatagtcttaa 323
|||||||||||||||||||||||||||||||
Sbjct: 497 gaactcagtactggtttagacatagtcttaa 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_g22.g1 MSMg01no111_g22.g1 CHROMAT_FILE:
MSMg01no111_g22.g1 PHD_FILE: MSMg01no111_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:45 2005
(655 letters)
>mm_chr12_35218738_35219792
Length = 1055
Score = 1013 bits (524), Expect = 0.0
Identities = 625/672 (93%), Gaps = 34/672 (5%)
Strand = Plus / Minus
Query: 1 ttttctattttcacatttctttttttt----taccattttttattattacgcattttcct 56
||||||||||||||||||||||||||| | |||||||||||||||| |||| |||
Sbjct: 1047 ttttctattttcacatttcttttttttaaaat---attttttattattacgtatttccct 991
Query: 57 caattacatttagaatgctatcccaaaagtaccccataccctccaccccacttccctacc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 caattacatttagaatgctatcccaaaagtaccccataccctccaccccacttccctacc 931
Query: 117 cacccattcccattttttggccctggcattcccctgtactggggcatataaagtttgcgt 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 930 cacccattcccattttttggccctggcattcccctgtactggggcatataaagtttgcat 871
Query: 177 gtccaatgggcctctctttccagtgatggctgactaggccatcttttgatacatatgcag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gtccaatgggcctctctttccagtgatggctgactaggccatcttttgatacatatgcag 811
Query: 237 ctagagtcaagagctctggggtactggttagttcataatgttgttgcacctacagggttt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ctagagtcaagagctctggggtactggttagttcataatgttgttgcacctacagggttt 751
Query: 297 cagatctcttataatgcacaatttaatactttagggaactgaggtttaaagcttagaatc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 cagatctcttataatgcacaatttaatactttagggaactgaggtttaaagcttagaatc 691
Query: 357 tgggatgaaatgaaaagcctacttacctgatgtttctatcattatgcctctagaggagag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgggatgaaatgaaaagcctacttacctgatgtttctatcattatgcctctagaggagag 631
Query: 417 attgcctttgcttagggtaggaacttcagccatcagtaagacagatttgagaaaagacca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 attgcctttgcttagggtaggaacttcagccatcagtaagacagatttgagaaaagacca 571
Query: 477 tgatgagcaggaggtctgaggggaggtctgtaataggttactttaactcatatttacagt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tgatgagcaggaggtctgaggggaggtctgtaataggttactttaactcatatttacagt 511
Query: 537 gct-gc---aggaa---a--------a--a----ataagtaaagaaagaaagaaaggaag 575
||| || | ||| | | | | ||| |||||||||||||||| |||
Sbjct: 510 gctggctata-gaacctagcttcttgagcacgccagaag-aaagaaagaaagaaagaaag 453
Query: 576 gaaggaaggaaggaagaaaggaagaaaggaggaaagaaaggaaggaaggaag-aaggaaa 634
||| ||| ||| ||||||| ||||||| | ||||||| ||||||||||||| ||||||
Sbjct: 452 aaagaaagaaagaaagaaagaaagaaagaaagaaagaa-ggaaggaaggaaggaaggaag 394
Query: 635 gaaagga-ggaa 645
||| ||| ||||
Sbjct: 393 gaa-ggaaggaa 383
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
