BAC Information

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BAC

Clone NameMSMg01-111P04
Chromosome12 (Build37)
Map Location 60,063,390 - 60,064,146
singlet/doubletsinglet
Overlap geneSec23a
Upstream geneSstr1, Clec14a, LOC100040183
Downstream geneSip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111P04.T7 (MSMg01no111_p04.b1)MSMg01-111P04.TJ (MSMg01no111_p04.g1)
ACCAG324489AG324490
length1,1161,327
length of high quality
(start - end)		758 (80 - 837)---
definitionCHROMAT_FILE: MSMg01no111_p04.b1 PHD_FILE: MSMg01no111_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:54 2005CHROMAT_FILE: MSMg01no111_p04.g1 PHD_FILE: MSMg01no111_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACTTTNNNNAATCAGTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGC
GGAATTCACTGACTGCTGGGATCAATGGTGTGCATACTATGCCCAGCTTA
TAATATTATTTTCAAATAGCCTATGATTATCAATTTTTCTATTTATTTTA
ATTGATTTTGTATAATTAACAGGAATGAAGGAAATTTTCTAATATCCATT
TTAATAAAAACTACATTGGAAAACTATATTGATAACCCAATCAATTGGCA
ACGAAATTTTACTATGGCAAGTAAAAGTATTTCCCAGGAGTCTACATTTC
TGAATTTTTTCATTTTCTCCTGATTCACAAATTCCAGCATTAGTAAAATT
TTTAAGTTTAAAAACAGGAAAATTATAGAAATCAGCAGATTAGTAGCATA
TATGAGAATTCACAGATCCATGGTACTCTGGCATGCCACAGACATGCCAA
AACATATTCTGAATTAAGGAAAAATCATGAAACATGTTAATGCCTAAGGA
CGTGAAAGAACTGGCAAGGAAGGGGCAATGTGCTGGAACTGAGGAAATGG
AGTCAGAAGGCCTGGGTTCCTGGGTCTCTGTTGCTTCTCAGAGCCCACCG
AGTCTGTGTGTTTCTGCAGCTGCAGACTTCCCTATGCCCACCAGTGCTGT
AAGGATGACCGAAGCAGCACAAGGCAATGGACAGCAGGCAGCACACTCAG
TAAGCACATGTCAGGACACATGTTTGGGAAATCATCACTGTATGACACTC
AAATGCTGTCCTCATTCTATACTCGCCATTTCCTCAGGAGAGCTCAGGTG
CCACCAACAACAACCTAGTGGCTATTGCTTGTGTTCTTCCTGTAGAAAAC
TTTTTTTCGTTTTACTTAGTTTAACCTCAACATATCCACTCCTAGATCTC
TGTATCTCCTATGTTGTTTATTTATACCTAGTACCAAGATATTATTTCCA
ATGTATAAAATACCTATGCTCAATTCTATTCAAAAAGTAACCAAGGAGTT
TGAAATCTAATTTTTCAAGGGGAGCCTTTTTTCTGTTTTAAAATATACCC
AAAAGAAGAAATGTGAAACAACCCAACCCTAACCTTACAAAATCCCTTTA
TTTTCAAAGGGGGGGC

NNNCCGTTTTGTGCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCTTTCCCACTTCATCTGGTCTGCACCGAGAGCTCCCG
ATCCCCTTAGAGCCCCCCTGTGTCCGAGAGGAGAGGGGGAGAGGGGGAGA
GGGAGGAGANNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTNNNNNNN
NNNNNNTNCNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC
CCCCCCCCTCTTTTTTTTTTTTCTTTTTCCTCTTCTTTTTTTTTTTTCTT
TTTTTTTTTTTTTCCCTTTTTCTTTTTTTCTTTCTTTTTTTCTTTTTTTT
TTTCTTCTCTTTTTCCTCTTTTCTCCTTTTTTCTTTTTTTTTTTTTTCTC
TCTCTTTTTTTTTTTCTCTTTCTTCTCTTTCTTCCTTTCTTTTTTTTTTT
TTTTTCTCCTTTCTTTCTTCTCTTTTTTTTTTTTTCTTTTTTCTCTCTTC
TTTTTCTTTTCTTCTCCTTTTTTCCCCCCCTTTTTCTTTTTTTTCTTTTT
TTTTTCTTTTTTTTTTTCTCTCTCTCTTCTTTTTTTTTTTTTTCTCTTTT
TTTTCTTTCTCTCCTTTCTTTTTTTTTTTCTTCTCTCTCTTTCCCTCTTT
CCTCTTTCTTTCTTCTTTTCCTCCTCTTCTCTTTTTTTCTTCTTCTTTTT
TCTTTCTTCTTTCTTTTCTCCCTTCTTCTTCCTTTTTCTTTCTCTTTTTC
TTCTTCTTTTTTTTTTTTTCCTTTCTTTTCCTTTCCTTTTTTTCCCTTCT
CTTTTTTTTTTTTTTTTTCTCTTCTTTCTTCTTTTTTCTTTCTTTTTTTT
TCCTTCTTTTCTTTCTNCTCCTCTTTCTTTTCTCTTTTCTTCTTTTTTTT
TCTTCTCTTTCTTTCTCTTCCCTTTCTTCCTTTTTCTCTCTTTTTTCTTT
TCTCTTTTCCTTTTTTTCTTCTCTCCCTTTTTTCTTTTTTCTCCTCTTTC
TTTTTTTTTTTTTTTTTTTCTTCTTTTTCTTTCTCTTTCTTCCTTTCTCT
TTTTTCTCTTCCTTCTTTCCTCTTTTTTTTCTCTTTCTTCTTCCTTTCCC
TTTTTCCTCTTTTTTCTCTTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_p04.b1 MSMg01no111_p04.b1 CHROMAT_FILE:
MSMg01no111_p04.b1 PHD_FILE: MSMg01no111_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:54 2005
         (758 letters)



>mm_chr12_60063190_60064346
          Length = 1157

 Score = 1435 bits (742), Expect = 0.0
 Identities = 754/758 (99%), Gaps = 1/758 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgcatactatgcccagcttataatattattttcaaatagcctatgattatcaatttttc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 gtgcatactatgcccagcttataatattattttaaaatagcctatgattatcaatttttc 260

                                                                       
Query: 61  tatttattttaattgattttgtataattaacaggaatgaaggaaattttctaatatccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttattttaattgattttgtataattaacaggaatgaaggaaattttctaatatccat 320

                                                                       
Query: 121 tttaataaaaactacattggaaaactatattgataacccaatcaattggcaacgaaattt 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaataaaaactacattagaaaactatattgataacccaatcaattggcaacgaaattt 380

                                                                       
Query: 181 tactatggcaagtaaaagtatttcccaggagtctacatttctgaattttttcattttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactatggcaagtaaaagtatttcccaggagtctacatttctgaattttttcattttctc 440

                                                                       
Query: 241 ctgattcacaaattccagcattagtaaaatttttaagtttaaaaacaggaaaattataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgattcacaaattccagcattagtaaaatttttaagtttaaaaacaggaaaattataga 500

                                                                       
Query: 301 aatcagcagattagtagcatatatgagaattcacagatccatggtactctggcatgccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcagcagattagtagcatatatgagaattcacagatccatggtactctggcatgccac 560

                                                                       
Query: 361 agacatgccaaaacatattctgaattaaggaaaaatcatgaaacatgttaatgcctaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacatgccaaaacatattctgaattaaggaaaaatcatgaaacatgttaatgcctaagg 620

                                                                       
Query: 421 acgtgaaagaactggcaaggaaggggcaatgtgctggaactgaggaaatggagtcagaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acgtgaaagaactggcaaggaaggggcaatgtgctggaactgaggaaatggagtcagaag 680

                                                                       
Query: 481 gcctgggttcctgggtctctgttgcttctcagagcccaccgagtctgtgtgtttctgcag 540
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 gcctgggttcctgggtctctgttgcttctcagagcccactgagtctgtgtgtttctgcag 740

                                                                       
Query: 541 ctgcagacttccctatgcccaccagtgctgtaaggatgaccgaagcagcacaaggcaatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgcagacttccctatgcccaccagtgctgtaaggatgaccgaagcagcacaaggcaatg 800

                                                                       
Query: 601 gacagcaggcagcacactcagtaagcacatgtcaggacacatgtttgggaaatcatcact 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gacagcaggcagcacactcagtaagcacatgtcaggacacatgtttgggaaatcatcact 860

                                                                       
Query: 661 gtatgacactcaaatgctgtcctcattctatactcgccatttcctcaggagagctcaggt 720
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtatgacactcaaat-ctgtcctcattctatactcgccatttcctcaggagagctcaggt 919

                                                 
Query: 721 gccaccaacaacaacctagtggctattgcttgtgttct 758
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 920 gccaccaacaacaacctagtggctattgcttgtgttct 957


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 758
Length of database: 1157
Length adjustment: 10
Effective length of query: 748
Effective length of database: 1147
Effective search space:   857956
Effective search space used:   857956
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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