BAC Information

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BAC

Clone NameMSMg01-112I12
Chromosome12 (Build37)
Map Location 16,975,335 - 17,118,237
singlet/doubletdoublet
Overlap geneRock2, Pqlc3, 2410004P03Rik, EG668514
Upstream geneLpin1, Ntsr2, Greb1, E2f6
Downstream geneKcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341, EG245297
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112I12.T7 (MSMg01no112_i12.b1)MSMg01-112I12.TJ (MSMg01no112_i12.g1)
ACCAG324918AG324919
length724703
length of high quality
(start - end)
235 (64 - 298)231 (57 - 287)
definitionCHROMAT_FILE: MSMg01no112_i12.b1 PHD_FILE: MSMg01no112_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:42 2005CHROMAT_FILE: MSMg01no112_i12.g1 PHD_FILE: MSMg01no112_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,118,003 - 17,118,237)(16,975,335 - 16,975,564)
sequence
GCGGCCGCTAAACGACTCCTATATTCAGAGAAGGCGCGGAATTCTCAGTT
ATTCCCCTGAGGTTGGGCTATGGGGCCAATTCACCAACTAGAGTCTGGAC
CTACACACAGTCTCTGGCCTTGAGCAACCCTTCCCCGAGGGTGGAGCTCA
GTATCTCAGGACCCAGCTTTCAGAGGGAACCTCAGGCTAGCTCCCTCCCT
GCCTCCACAAATAGGGAAGTACTAGGCTTCCTTCTGGAGACTTCTCCCCT
GACCTGCGAACGTGCTTTCTCTTTGGGTTACAAGCCAGCACCAAATTATG
GTTCACATAATATGGACAACACACTACAAGTCTCGTGTGCTTGCCTAATT
GCAGGCTGGGGAGGGCATTCTATGGCACCTGCATGGTGATTTTATTGTAC
TTCTACACCACGTTTCTCTGCAGTGTGATGGCTAATCTTGTCAACTTGAC
CAAATCTGGAATCCATTAATACTTTTTTAGACGCTCACATTCGCGCATGC
GCCCTTTTTCTTGGTCGGATCATTTGACGCGAGAAGGCTCCCCGTATCCC
CCACCCTCCCCTTGTGGTGCCTGCCCACTTCGCTGGACATGCATTGACGC
TCCTCTTCCCCTTTTGGCCTTTTTTCCTCTTTCCCCTTTCTCTTCCTTTA
TTGCTCCCACTCCTTGACACCCATGTTCCTTCCATCCCTGTTGTTTGGGG
CCCTTTTCCCCTTTGCGCGTCAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAATCCTGTTACTGTATGCCTAAGTTTTTTATGACATATCTCTGA
AATACACAGACTCTTTGGCTGCCCAGCTGGAAATTACCCTTACCAAAGCA
GATTCTGAGCAGCTGGCTCGTTCCATTGCTGAAGAACAATACTCTGATTT
GGAAAAAGAGAAGATCATGAAAGAGCTGGAGATCAAAGAGATGATGGCTA
GACACAAACAAGAACTTACTGAAAAGGATACTACAACTGCATCTGTAAGT
AACATTCTTGGTGTCTTGGGCTTATAATTAAATTACTATGTCATAAAATC
TCAGAACCATCTGGGAACTCTCAGCTATAAATTGAAAAGTGACTATTTTT
ACCAGATTCTAATAGTCTAACTAAAGAAACATTTCTGAGGAAATACTAAC
AGAAAGCAGTTTGTCTTGTGCTGACCTACTGACCTGCACAGTAAAGGGTG
CGGATATTTCACACGAGGCACATGTTAGACCTTTGTTTGTCGCCGACACT
CCTATCTAGCATAGTCCTTATATGTTTCCGGAATATCGTCACTTTTGGTG
AAACGCCTCTTATTACTTATGTAAAGCGTACCTAGTTCCACAATCTATTG
TGTATTATACAAACCCGATTCTATCCGATCGACTCTCCATTTATTTACAC
TGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_i12.b1 MSMg01no112_i12.b1 CHROMAT_FILE:
MSMg01no112_i12.b1 PHD_FILE: MSMg01no112_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:42 2005
         (235 letters)



>mm_chr12_17117803_17118437
          Length = 635

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggctatggggccaattcaccaactagagtctggacctacacacagtctctggccttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgggctatggggccaattcaccaactagagtctggacctacacacagtctctggccttga 376

                                                                       
Query: 61  gcaacccttccccgagggtggagctcagtatctcaggacccagctttcagagggaacctc 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 375 gcaacccttccccgagggtggagctcagtatctcaggacccagttttcagagggaacctc 316

                                                                       
Query: 121 aggctagctccctccctgcctccacaaatagggaagtactaggcttccttctggagactt 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 315 aggctagctccctccctgcctccacaaatagggaagtactaggtttccttctggagactt 256

                                                                  
Query: 181 ctcccctgacctgcgaacgtgctttctctttgggttacaagccagcaccaaatta 235
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctcccctgacctgcgaatgtgctttctctttgggttacaagccagcaccaaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no112_i12.g1 MSMg01no112_i12.g1 CHROMAT_FILE:
MSMg01no112_i12.g1 PHD_FILE: MSMg01no112_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:43 2005
         (231 letters)



>mm_chr12_16975135_16975765
          Length = 631

 Score =  437 bits (226), Expect = e-127
 Identities = 229/230 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcctgttactgtatgcctaagttttttatgacatatctctgaaatacacagactcttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aatcctgttactgtatgcctaagttttttatgacatatctctgaaatacagagactcttt 260

                                                                       
Query: 61  ggctgcccagctggaaattacccttaccaaagcagattctgagcagctggctcgttccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctgcccagctggaaattacccttaccaaagcagattctgagcagctggctcgttccat 320

                                                                       
Query: 121 tgctgaagaacaatactctgatttggaaaaagagaagatcatgaaagagctggagatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgaagaacaatactctgatttggaaaaagagaagatcatgaaagagctggagatcaa 380

                                                             
Query: 181 agagatgatggctagacacaaacaagaacttactgaaaaggatactacaa 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagatgatggctagacacaaacaagaacttactgaaaaggatactacaa 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)