Query= MSMg01no112_j07.b1 MSMg01no112_j07.b1 CHROMAT_FILE:
MSMg01no112_j07.b1 PHD_FILE: MSMg01no112_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:46 2005
(181 letters)
>mm_chr12_96566509_96567089
Length = 581
Score = 250 bits (129), Expect = 5e-71
Identities = 147/153 (96%)
Strand = Plus / Plus
Query: 29 aaaagatacagcaatgtgttacacaacttgaattcatttttccaactcaatttccccaga 88
|||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 229 aaaagatacagcaatgtgttacacaacttgaattcagtttcccaactcagtttccccaga 288
Query: 89 ttactaagcaggatgtctttgcacatgtctctgatggtctcagctctaaggatgcttgtg 148
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 289 ttactaagcaggatgtctttgcatatgtctctgatggtctcagctctgaggatgcttgtg 348
Query: 149 aatgcttagagtgctgctcatatgaggtttgta 181
|||||| ||||||||||||||||||||||||||
Sbjct: 349 aatgctcagagtgctgctcatatgaggtttgta 381
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space: 99129
Effective search space used: 99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no112_j07.g1 MSMg01no112_j07.g1 CHROMAT_FILE:
MSMg01no112_j07.g1 PHD_FILE: MSMg01no112_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:46 2005
(522 letters)
>mm_chr12_96686704_96687620
Length = 917
Score = 816 bits (422), Expect = 0.0
Identities = 494/522 (94%), Gaps = 15/522 (2%)
Strand = Plus / Minus
Query: 4 agaaataaagcaacattctcaaggcctatcatagagtgaagagattaaacttaggaccca 63
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 636 agaaataaagcaacattctcaaggcctatcatagagtgaagagatcaaacttaggaccca 577
Query: 64 tcaatcctagagcctattccttaaagcataactgaactaaattgtgaaagtggaaataga 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 576 tcaatcctagagcctattccttaaagcataactgaactaaattgtgtaagtggaaataga 517
Query: 124 attgtgacaaagaagtaaaagtcaaatggagaatgtcaaatagatatgattaatttttct 183
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 516 attgtgacaaagaagtaaaagtcaaatggagagtgtcaaatagatatgatcaatttttct 457
Query: 184 attgtctgaaaaacgggagggatttgctcatattccagtgctgaagagttataaacatag 243
|||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 456 attgtctgaaaaacaggagggatttgcttatatttcagtgctgaagagttataaacatag 397
Query: 244 gaaacaaaattgtggagttgtcactgaagtatgctgagagacggtgtggtggctacttga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaaacaaaattgtggagttgtcactgaagtatgctgagagacggtgtggtggctacttga 337
Query: 304 atattctaatatttttatttctttatttttctgaaacaaggattcacttgtttcacat-- 361
||||||||||| ||||||||||||||||||||||||| |||||||||| | ||
Sbjct: 336 atattctaata--tttatttctttatttttctgaaacagggattcactt-----atatag 284
Query: 362 gtgatcatggcttgacctcacttcaatcttactgtttcagtctgacccatcttaagagaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 283 gtgatcatggcttgacctcacttcaatcttactgtttcagtctgacccatcaaaagagaa 224
Query: 422 ataaatttttcatttctctttttcctcttcctctcctccctctccctct-cctc-ccc-c 478
|||||||||||||||||||| | |||| ||| || |||||||||||||| |||| ||| |
Sbjct: 223 ataaatttttcatttctcttctccctc-tcc-ct-ctccctctccctctccctctccctc 167
Query: 479 tccctctccctctccctctcctcctcctcctgcttctctgct 520
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tccctctccctctccctctcctcctcctcctgcttctctgct 125
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 917
Length adjustment: 10
Effective length of query: 512
Effective length of database: 907
Effective search space: 464384
Effective search space used: 464384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
