BAC Information

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BAC

Clone NameMSMg01-112P13
Chromosome12 (Build37)
Map Location 80,530,690 - 80,594,568
singlet/doubletdoublet
Overlap geneRad51l1
Upstream geneGphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26
Downstream geneLOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112P13.T7 (MSMg01no112_p13.b1)MSMg01-112P13.TJ (MSMg01no112_p13.g1)
ACCAG325239AG325240
length689690
length of high quality
(start - end)		635 (46 - 680)614 (77 - 690)
definitionCHROMAT_FILE: MSMg01no112_p13.b1 PHD_FILE: MSMg01no112_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:16 2005CHROMAT_FILE: MSMg01no112_p13.g1 PHD_FILE: MSMg01no112_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,594,047 - 80,594,568)(80,530,690 - 80,531,303)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGAGTTACCCTGACTAGCATATATACTCCCCTGAGAGGCATCCT
CTACGGATCTCCAAGCAAACAAGTTCCAGGAGCAGAGGGAAGAAGGAAAG
ACAAGGCTTCTCTTAAGGCTGCCTAGGAATGAGCATAGCCAACAACAGGA
GCACACTTGGATGAAAACTGCTGGCCCACACCTTGATCTCAGTCTACACA
GAGAACTTAGCCAGCACTGTCCCTGACTCCTGACCCGCAGAACTGTGAGC
TGTGAATGAATGAATGTTGTTTTAGGCTGCTCAGTTTGTGACTACACTGC
AACAGAAACAGACACGCCTATCAACTAAGTCAGTTGCTTTACTCCCCTGC
CTGTTCTTCAACTTTCTATTATATAGATTTTCTTGAATTAAATCCATGAA
TAAAATTAACACAAATATCTTCATTTTAATTTAAACAAAATGTCCAGTGT
TTATTTTTTTAAAAGCCATTCTTCCAGTCCCTCAAGTCATACTTCACCAA
CTGGACTCCATGTCATATAGGAAATTTTAAGATTTGTTTTTAATTTTGAA
TTATGGGTATGCATGCATGCCTGTATGGGGGTATGTGCATGTATATTTGG
GTGTTTGAGGATCTCCTGGAGCTGGAGTTATAGGGGGGT

CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGCAGAAGTAGTGATGACTTCT
CAGGAAAGAGGCAGGAGGGGGCTGCAGAGGGCCCTGATGGATCCTTAAGA
GTAACTTTCTAGCTCTTCTAAAGTAAGGAGTGGGGTCTGGGAATCACACA
CCCTGATTTTCCTCTGGTTTTCTAATCATGGAGTCTAGTTTCTTTGCTTG
TCTCCTACTTGTTCAGAAGTTGTGATTTGTAGCGAGGACTTAAGTGGATG
TTATAGAAAGTGGAAATGAGATAAGATCTAGATGGCTGTTTGTGGGTTTA
GTTTCAAAGACCATATTTATCTAGAAAATAAGCAAGTAGAGTCAGCAGGC
ATTTTCCGTGAGCAGTATCTGTTCCTGGCATTTCACTTTGGCCACCATTG
GTGTCCCTACAATCTCTCAAAGCTCCCCTGCTTTGTGTCAGAACGCCCCA
CCAAGACATCAAAGCTTTGCTGTGTGTTACTTAGTGTAGCCTCGCATTGT
TCTGCTACCACGTGGCTCGAGTTTTAAAGCCAAGTGTAGACAGTTAAATC
TTCTCACTTGGAGCATATACAAATGTGGTAACAAGGGGCAGAAATAGACT
GGGTAGAGAGACTCATCCTGGGCCTTAGGCTTCGGGAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_p13.b1 MSMg01no112_p13.b1 CHROMAT_FILE:
MSMg01no112_p13.b1 PHD_FILE: MSMg01no112_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:16 2005
         (635 letters)



>mm_chr12_80593534_80594568
          Length = 1035

 Score = 1002 bits (518), Expect = 0.0
 Identities = 521/522 (99%)
 Strand = Plus / Minus

                                                                        
Query: 114  tctcttaaggctgcctaggaatgagcatagccaacaacaggagcacacttggatgaaaac 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 tctcttaaggctgcctaggaatgagcatagccaacaacaggagcacacttggatgaaaac 976

                                                                        
Query: 174  tgctggcccacaccttgatctcagtctacacagagaacttagccagcactgtccctgact 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  tgctggcccacaccttgatctcagtctacacagagaacttagccagcactgtccctgact 916

                                                                        
Query: 234  cctgacccgcagaactgtgagctgtgaatgaatgaatgttgttttaggctgctcagtttg 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  cctgacccgcagaactgtgagctgtgaatgaatgaatgttgttttaggctgctcagtttg 856

                                                                        
Query: 294  tgactacactgcaacagaaacagacacgcctatcaactaagtcagttgctttactcccct 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855  tgactacactgcaacagaaacagacacgcctatcaactaagtcagttgctttactcccct 796

                                                                        
Query: 354  gcctgttcttcaactttctattatatagattttcttgaattaaatccatgaataaaatta 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  gcctgttcttcaactttctattatatagattttcttgaattaaatccatgaataaaatta 736

                                                                        
Query: 414  acacaaatatcttcattttaatttaaacaaaatgtccagtgtttatttttttaaaagcca 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735  acacaaatatcttcattttaatttaaacaaaatgtccagtgtttatttttttaaaagcca 676

                                                                        
Query: 474  ttcttccagtccctcaagtcatacttcaccaactggactccatgtcatataggaaatttt 533
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675  ttcttccagttcctcaagtcatacttcaccaactggactccatgtcatataggaaatttt 616

                                                                        
Query: 534  aagatttgtttttaattttgaattatgggtatgcatgcatgcctgtatgggggtatgtgc 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  aagatttgtttttaattttgaattatgggtatgcatgcatgcctgtatgggggtatgtgc 556

                                                      
Query: 594  atgtatatttgggtgtttgaggatctcctggagctggagtta 635
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555  atgtatatttgggtgtttgaggatctcctggagctggagtta 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no112_p13.g1 MSMg01no112_p13.g1 CHROMAT_FILE:
MSMg01no112_p13.g1 PHD_FILE: MSMg01no112_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:16 2005
         (614 letters)



>mm_chr12_80530490_80531503
          Length = 1014

 Score = 1141 bits (590), Expect = 0.0
 Identities = 608/614 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggcagaagtagtgatgacttctcaggaaagaggcaggagggggctgcagagggccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggcagaagtagtgatgacttctcaggaaagaggcaggagggggctgcagagggccctg 260

                                                                       
Query: 61  atggatccttaagagtaactttctagctcttctaaagtaaggagtggggtctgggaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggatccttaagagtaactttctagctcttctaaagtaaggagtggggtctgggaatca 320

                                                                       
Query: 121 cacaccctgattttcctctggttttctaatcatggagtctagtttctttgcttgtctcct 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cacaccctgattttcctctggttttctaatcacggagtctagtttctttgcttgtctcct 380

                                                                       
Query: 181 acttgttcagaagttgtgatttgtagcgaggacttaagtggatgttatagaaagtggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttgttcagaagttgtgatttgtagcgaggacttaagtggatgttatagaaagtggaaa 440

                                                                       
Query: 241 tgagataagatctagatggctgtttgtgggtttagtttcaaagaccatatttatctagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagataagatctagatggctgtttgtgggtttagtttcaaagaccatatttatctagaa 500

                                                                       
Query: 301 aataagcaagtagagtcagcaggcattttccgtgagcagtatctgttcctggcatttcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataagcaagtagagtcagcaggcattttccgtgagcagtatctgttcctggcatttcac 560

                                                                       
Query: 361 tttggccaccattggtgtccctacaatctctcaaagctcccctgctttgtgtcagaacgc 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tttggccaccattggtgtccccacaatctctcaaagctcccctgctttgtgtcagaatgc 620

                                                                       
Query: 421 cccaccaagacatcaaagctttgctgtgtgttacttagtgtagcctcgcattgttctgct 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccaccaagagatcaaagctttgctgtgtgttacttagtgtagcctcgcattgttctgct 680

                                                                       
Query: 481 accacgtggctcgagttttaaagccaagtgtagacagttaaatcttctcacttggagcat 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accacgtggctctagttttaaagccaagtgtagacagttaaatcttctcacttggagcat 740

                                                                       
Query: 541 atacaaatgtggtaacaaggggcagaaatagactgggtagagagactcatcctgggcctt 600
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atacaaatgtggcaacaaggggcagaaatagactgggtagagagactcatcctgggcctt 800

                         
Query: 601 aggcttcgggagcg 614
           ||||||||||||||
Sbjct: 801 aggcttcgggagcg 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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