BAC Information

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BAC

Clone NameMSMg01-113B14
Chromosome12 (Build37)
Map Location 8,480,110 - 8,480,626
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3
Downstream geneBC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113B14.T7 (MSMg01no113_b14.b1)MSMg01-113B14.TJ (MSMg01no113_b14.g1)
ACCAG325332AG325333
length708706
length of high quality
(start - end)
531 (43 - 573)515 (67 - 581)
definitionCHROMAT_FILE: MSMg01no113_b14.b1 PHD_FILE: MSMg01no113_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:26 2005CHROMAT_FILE: MSMg01no113_b14.g1 PHD_FILE: MSMg01no113_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTTCTTTTCCTTTTTTAATTTATATATTATATTTATATAAGTACACT
GTAGCTGTTTTCAGACATACCAGAAGAGGGCATCAGATTCTATTACGGAT
GGTTGTGAGCCACCGAGTGGTTGCTGGGAATTGAACTCAGGACCCCTGGA
AGAGCAATCAGTGATCTTAACCACTGAGCCATCTCTCCAGCCAGGGAGTT
ATTTTCTAAGTACTCTTACATTGTCGAAACCACTAAGAGTCATATTCACA
ACTAGAATTTAGTTGTAAAATTTTAAGCCATAGCCAGGCAGTGGTGGTGC
ACACCTTTAATCCCAGCACTTGGGAGGCAAAGGTAGGCAGATTTCTGAGT
TTGAGGACAGCCTGCTCTACAGAGTGAGCTCCAGGACAGCCAGGGCTACA
CAGAGAAACCCTGTCTCACAAAAAAAAAAGTCTTGAACCATGCATATAAA
ATATTCTAAGTACAGAGATTATTTTAACTAAATGATCACACTCAACACTA
CCATCTCAGGGAACACTGATATCGTGGTTTCTCCTCACACCAATGATGGG
CTCTTTCAACATAGTGTTCCCCAGGATGCTATACCCCAAACCCCTGCTCC
CCAACAACACAGACCTGGGGGCTCTGCTGCATTGTTGGTGGCCGTGTCTG
GAATTAAG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTCCCTGCTGATCCTTGCAAACTCCAGAACTAG
GGCTGGCACACAGCAAATCTTTGTTGAGTGGGTGGTTCAAACAATACCAA
TGTTAGTATCGAGTCGGCCTCACTGTTGTAGTAAACAGCTGGACACTCCC
AGAGTTTGAGCAGGTGCATGTGTGACTTTGAAAGCTGCAGGGGAGAGTTA
CCTGTCGTTAATGAACAGGCTGGAAAAGCATGGCTTTTGTCACCTTTCAT
TTTGATCGGGTCTGTCCTACATGCTAAGAAGCAGAAGCCATCATGAAGGC
AATACTTTCAAAACTCATACTGTAACGCTTCTTAGCTTTTATATATATAT
ATATATATATATAATGTTTTTATGAGTTGGATTTTGCAGTTCTCCTTGGG
TTTGTGGAGGGCAAGGCAGTTTCAGCATTCCCATTTTACAGATCGGGATG
TTGAGGCTGAACGTATCCCCAAAAGAGCCAAAGCTGAGATAGAAATGACT
GGAGATTTTGTGCTTTTCTAATACCCCAAGCTGGGGATAGTTGAGTCATC
AAAGTGTACAATTTTCTTTTTGTTCCCCCAAATGAGAGGTGGTACTCGAT
CTGGTCTGCATGGAAACACTGCTATAAGCCAGATGCAGGCTCTGAATGAC
TATGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_b14.g1 MSMg01no113_b14.g1 CHROMAT_FILE:
MSMg01no113_b14.g1 PHD_FILE: MSMg01no113_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:26 2005
         (515 letters)



>mm_chr12_8480110_8481025
          Length = 916

 Score =  888 bits (459), Expect = 0.0
 Identities = 498/519 (95%), Gaps = 17/519 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccctgctgatccttgcaaactccagaactagggctggcacacagcaaatctttgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 attccctgctgatccttgcaaactccagaactagggctggcacacagcaaatctttgttg 458

                                                                       
Query: 61  agtgggtggttcaaacaataccaatgttagtatcgagtcggcctcactgttgtagtaaac 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 457 agtgggtggttcaaacaataccaatgttagcatcgagtcggcctcactgttgtagtaaac 398

                                                                       
Query: 121 agctggacactcccagagtttgagcaggtgcatgtgtgactttgaaagctgcaggggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agctggacactcccagagtttgagcaggtgcatgtgtgactttgaaagctgcaggggaga 338

                                                                       
Query: 181 gttacctgtcgttaatgaacaggctggaaaagcatggcttttgtcacctttcattttgat 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gttacctgtcattaatgaacaggctggaaaagcatggcttttgtcacctttcattttgat 278

                                                                       
Query: 241 cgggtctgtcctacatgctaagaagcagaagccatcatgaaggcaatacttt-caaaact 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 277 cgggtctgtcctacatgctaagaagcagaagccatcatgaaggcaatacttttcaaaact 218

                                                                       
Query: 300 catactgtaacgcttct-tagcttt-tatatatatatatatatatatata---------- 347
           ||||||||||||||||| ||  | | ||||||||||||||||||||||||          
Sbjct: 217 catactgtaacgcttctata--tatatatatatatatatatatatatatatatgtatata 160

                                                                       
Query: 348 --atgtttttatgagttggattttgcagttctccttgggtttgtggagggcaaggcagtt 405
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 taatgtttttatgagttggattttgcagttctccttgggtttgtggagggcaaggcagtt 100

                                                                       
Query: 406 tcagcattcccattttacagatcgggatgttgaggctgaacgtatccccaaaagagccaa 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  tcagcattcccattttacagatcgggatgttgaggctgaacgtatccccaaaagagccaa 40

                                                  
Query: 466 agctgagatagaaatgactggagattttgtgcttttcta 504
           |||||||||||||||||||||||||||||||| ||||||
Sbjct: 39  agctgagatagaaatgactggagattttgtgcctttcta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space:   457530
Effective search space used:   457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)