Query= MSMg01no113_g04.b1 MSMg01no113_g04.b1 CHROMAT_FILE:
MSMg01no113_g04.b1 PHD_FILE: MSMg01no113_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:48 2005
(374 letters)
>mm_chr12_55043039_55043812
Length = 774
Score = 702 bits (363), Expect = 0.0
Identities = 369/371 (99%)
Strand = Plus / Minus
Query: 4 ggaattcttttaagatcccagtggtcatcttcttctacccatttttgtttccagtttaag 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggaattcttttaagagcccagtggtcatcttcttctacccatttttgtttccagtttaag 515
Query: 64 gcaaaacagttagatggctaaattccaaacttcacactccatgtcctcatctgaattaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gcaaaacagttagatggctaaattccaaacttcacactccatgtcctcatctgaattaaa 455
Query: 124 acacactttacaaaaactattaagatcctttcaaatcacaaagagtagaatctgtgagta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acacactttacaaaaactattaagatcctttcaaatcacaaagagtagaatctgtgagta 395
Query: 184 attccatccagtatgacttgttggttgtatccctagcccttcattaggatcttcatcatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 attccatccagtatgacttgttggttgtatccctagcccttcattaggatcttcatcatg 335
Query: 244 gaaaatggtagctttccacccttagagggatactctcattggctcaaatgacatttaggt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gaaaatggtagctttccacccttagagggatactctcattggctcaaatgacatttaggt 275
Query: 304 caaatttaagaacctcttcattccatagtaagttcaatcaccacatttggtagttacatt 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 274 caaatttaagaacctcttcattccatagtaagttcaatcaccatatttggtagttacatt 215
Query: 364 tgtccaactca 374
|||||||||||
Sbjct: 214 tgtccaactca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_g04.g1 MSMg01no113_g04.g1 CHROMAT_FILE:
MSMg01no113_g04.g1 PHD_FILE: MSMg01no113_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:48 2005
(269 letters)
>mm_chr12_54925668_54926336
Length = 669
Score = 439 bits (227), Expect = e-128
Identities = 265/293 (90%), Gaps = 24/293 (8%)
Strand = Plus / Plus
Query: 1 agtaatatacacagacaatgtaattagcctaacattcctcaatagtaactattaagtgat 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 agtaatatatacagacaatgtaattagcctaacattcctcaatagtaactattaagtgat 236
Query: 61 ctgaatattggtccctgcaccatgtactctaataataaatgtaatgtatatgtgttagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ctgaatattggtccctgcaccatgtactctaataataaatgtaatgtatatgtgttagta 296
Query: 121 atagtttattttatatatatatat------------------------gcacatttaaaa 156
|||||||||||||||||||||||| ||||||||||||
Sbjct: 297 atagtttattttatatatatatatatatatatatatatatatatatatgcacatttaaaa 356
Query: 157 tactttctagaaatctacaggatatcaaataacatttggtttttttctttccgttacttt 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tactttctagaaatctacaggatatcaaataacatttggtttttttctttccgttacttt 416
Query: 217 tcaaagccaacaacttaacatatggcactctctgtgtgactaattgccatgtg 269
|||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 417 tcaaagccaacaacttaacacatggcactctctgtgtgaccaagtgccatgtg 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
