BAC Information

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BAC

Clone NameMSMg01-113N15
Chromosome12 (Build37)
Map Location 97,459,207 - 97,498,302
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik
Downstream geneLOC100039664, EG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113N15.T7 (MSMg01no113_n15.b1)MSMg01-113N15.TJ (MSMg01no113_n15.g1)
ACCAG325882AG325883
length700700
length of high quality
(start - end)		655 (46 - 700)630 (71 - 700)
definitionCHROMAT_FILE: MSMg01no113_n15.b1 PHD_FILE: MSMg01no113_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:24 2005CHROMAT_FILE: MSMg01no113_n15.g1 PHD_FILE: MSMg01no113_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,459,207 - 97,459,645)(97,497,674 - 97,498,302)
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGTTTGAACAATACCAAAACAAATATCGTCCAACTTACAGTTTT
AGTTTGTCCTCACTTCTGACCTGCTAATTTCTTTGAGAATAAGTTTGTTT
TCTTAAGTCAATGATAATTTAAAAATGAATCCCATGTCTTAAATAGCAAT
GAACATAAACTATATATCCATCAACACAAATATATTTAGGTTGGTTGGAG
TAATAAATAAGTAAATAAAACGTACTGAAAATACCACTAACATGTCTATC
CATAGAGACGGTAGTAAAGAAGATTCCTAAATGGACAAAGAGGTATCTTG
TCATATAGTTCACCCATCCTTTAAATTCACATGCAACCTCCATCCTTAGT
AGACCATCTTTCTAACTACCAACATTTAAGCAGATTTTCCAGGGTGCATT
TGTTGGAGTATAAATACAATATTCCTAAATTATTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCATTCTTTCTTTCTTTCTTTCT
TTAGATCTCATTATGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
GAACTTCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCATTGAGCCA


ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATGTATAAGGCACTTTTGAGTAATTGGTT
ACTAACCTTTCCTTATTTGGGTCTTACAGTTGGATGGGGCAAATTGATAA
AATTAGGGTCTATTTTAATAGCAGGAATCCACCATGTTTTAAAGTATGAA
AACTGTAGGAAGTGGTATTGTTATTCATTATCCTTGCTTATTGCAGTGGG
CATTTAATCAAAGTTTAATACTCCTAATAGTAATGGCATTAAAAACATAA
TCAGTGATATACGCTTTCATTGCATCTTAGACTTATGCACTGAATATAAA
AACTCCATCCTCAGCTAAATAGATGTGGAGAGAAAGGATTTCTGGATCAT
AAGCCTGGAGAAAATATAGAGAAATCCAAAAGTATTATGAAGCTGCATGG
TAGTGATGAGTTGCCAAGGTAATGGATTTTTAAATATAAGAAAACTACAA
TTGATTTGATAGCCAAAACCAACTATAAATATGAATAGGTACTAGATGCT
TGTTGTATTTAAAATATGGAACATAACCTCTAGATATTATGTGATATGGC
TTTAGAAGAATAAAAAATTTATGTATGCAAAATGAAATGGTCATTAATAC
TGAATCATCAATAAATTCTCTCTCTTTCCTGTGTGTGCGAATGTGTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_n15.b1 MSMg01no113_n15.b1 CHROMAT_FILE:
MSMg01no113_n15.b1 PHD_FILE: MSMg01no113_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:24 2005
         (655 letters)



>mm_chr12_97459003_97460057
          Length = 1055

 Score =  787 bits (407), Expect = 0.0
 Identities = 431/439 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtttgaacaataccaaaacaaatatcgtccaacttacagttttagtttgtcc 64
           ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtttgaggaataccaaaacaagtatcgtccaacttacagttttagtttgtcc 264

                                                                       
Query: 65  tcacttctgacctgctaatttctttgagaataagtttgttttcttaagtcaatgataatt 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcacttctgacctgctgatttctttgagaataagtttgttttcttaagtcaatgataatt 324

                                                                       
Query: 125 taaaaatgaatcccatgtcttaaatagcaatgaacataaactatatatccatcaacacaa 184
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 taaaaatgaatcccatgtattaaatagtaatgaacataaactatatatccatcaacacaa 384

                                                                       
Query: 185 atatatttaggttggttggagtaataaataagtaaataaaacgtactgaaaataccacta 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 atatatttaggttggttggagtaataaataagtaaataaaacctactgaaaataccacta 444

                                                                       
Query: 245 acatgtctatccatagagacggtagtaaagaagattcctaaatggacaaagaggtatctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acatgtctatccatagagacggtagtaaagaagattcctaaatggacaaagaggtatctt 504

                                                                       
Query: 305 gtcatatagttcacccatcctttaaattcacatgcaacctccatccttagtagaccatct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcatatagttcacccatcctttaaattcacatgcaacctccatccttagtagaccatct 564

                                                                       
Query: 365 ttctaactaccaacatttaagcagattttccagggtgcatttgttggagtataaatacaa 424
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 565 ttctaactaccaacatttaagcagattttccagggtacatttgttggagtataaatacaa 624

                              
Query: 425 tattcctaaattattttct 443
           |||||||||||||||||||
Sbjct: 625 tattcctaaattattttct 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no113_n15.g1 MSMg01no113_n15.g1 CHROMAT_FILE:
MSMg01no113_n15.g1 PHD_FILE: MSMg01no113_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:24 2005
         (630 letters)



>mm_chr12_97497474_97498503
          Length = 1030

 Score = 1208 bits (625), Expect = 0.0
 Identities = 628/629 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtataaggcacttttgagtaattggttactaacctttccttatttgggtcttacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aatgtataaggcacttttgagtaattggttactaacctttccttatttgggtcttacagt 770

                                                                       
Query: 61  tggatggggcaaattgataaaattagggtctattttaatagcaggaatccaccatgtttt 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tggatggggcaaattgatgaaattagggtctattttaatagcaggaatccaccatgtttt 710

                                                                       
Query: 121 aaagtatgaaaactgtaggaagtggtattgttattcattatccttgcttattgcagtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aaagtatgaaaactgtaggaagtggtattgttattcattatccttgcttattgcagtggg 650

                                                                       
Query: 181 catttaatcaaagtttaatactcctaatagtaatggcattaaaaacataatcagtgatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 catttaatcaaagtttaatactcctaatagtaatggcattaaaaacataatcagtgatat 590

                                                                       
Query: 241 acgctttcattgcatcttagacttatgcactgaatataaaaactccatcctcagctaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 acgctttcattgcatcttagacttatgcactgaatataaaaactccatcctcagctaaat 530

                                                                       
Query: 301 agatgtggagagaaaggatttctggatcataagcctggagaaaatatagagaaatccaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agatgtggagagaaaggatttctggatcataagcctggagaaaatatagagaaatccaaa 470

                                                                       
Query: 361 agtattatgaagctgcatggtagtgatgagttgccaaggtaatggatttttaaatataag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agtattatgaagctgcatggtagtgatgagttgccaaggtaatggatttttaaatataag 410

                                                                       
Query: 421 aaaactacaattgatttgatagccaaaaccaactataaatatgaataggtactagatgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaaactacaattgatttgatagccaaaaccaactataaatatgaataggtactagatgct 350

                                                                       
Query: 481 tgttgtatttaaaatatggaacataacctctagatattatgtgatatggctttagaagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgttgtatttaaaatatggaacataacctctagatattatgtgatatggctttagaagaa 290

                                                                       
Query: 541 taaaaaatttatgtatgcaaaatgaaatggtcattaatactgaatcatcaataaattctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 taaaaaatttatgtatgcaaaatgaaatggtcattaatactgaatcatcaataaattctc 230

                                        
Query: 601 tctctttcctgtgtgtgcgaatgtgtttc 629
           |||||||||||||||||||||||||||||
Sbjct: 229 tctctttcctgtgtgtgcgaatgtgtttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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