BAC Information

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BAC

Clone NameMSMg01-115A21
Chromosome12 (Build37)
Map Location 112,828,612 - 112,947,862
singlet/doubletdoublet
Overlap geneMark3, Ckb, 6720458F09Rik
Upstream gene9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5
Downstream geneBag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115A21.T7 (MSMg01no115_a21.b1)MSMg01-115A21.TJ (MSMg01no115_a21.g1)
ACCAG326785AG326786
length745714
length of high quality
(start - end)
630 (38 - 667)238 (85 - 322)
definitionCHROMAT_FILE: MSMg01no115_a21.b1 PHD_FILE: MSMg01no115_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:54 2005CHROMAT_FILE: MSMg01no115_a21.g1 PHD_FILE: MSMg01no115_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,828,612 - 112,829,238)(112,947,627 - 112,947,862)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
TACATAGTAAGTTTGAAGCCAACTTGCTACCTGAGACCTTGCATCCATAA
AAGGGGTGAGGGGTTGGGGTGAGAAACAAGGTTATTTAATACACTACAAA
TAGAAGAGTAGGCAGCATGGTAGCAATGGGATTACTAGCCAGTTATGGTC
TGTGATTCTTATCACATTAAGGAAGGTCCATTCTTTTGTTTTTGAGACAG
GGTAGGTTGTCCTGGAATTGTGTAGATCAGGCTGCCTGGAACTCACAGAG
ATCTGCCTGCATCTGCCTCCCAAGTGTTGGCATTAAAAGCATGTATCACA
GGAAGGTCTATTCTAATCCTAGTTTGCTAATAGTCTTTCTTTTACATCAT
AAATTGGTCAGTTTTATGGAGTCCTTTTCTGTAGTGGACGAAATAATATC
CTAACCACCCCACCCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTCTCCT
AGAACTCACTCTGTAGACCATTGTGGCCTTGAACTCAGAGATCCACCAGC
CTCTGCCTCCCAAAAGTTGAGATTAAAGTTGTGTGCTACTATACCAGGCT
CCCTAGATGTTTTAAAAAGTAAAAATTGACTTTGTATCTCTAAAGTACAA
AATTTGGAAGAAGAGCCACTTACTGTCACAGTTTGGCTTTGCAGGTTATT
TTTAACATTTGGAAAACCTTTGCCATGATTTAAGGATATAGCTTA
NCCCTCCCTCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTTGAATAAAAT
CCAAGCATAGAAAGAGACGCTTTATTATGCTAAACAGTGCTGGGACTTTT
TAAAGTTACAAGGCCTAATGGGTCCTGCCCAGTTTTAATGGGGTGGGGTT
TTTGTTTGGATGGTCTGTTTTATCATAAACATTTTTGCTTGAAAAAAATC
TGTCCCCCTGTGCTGTTCATTTTAGAGGGGGGATCTTGTGTCCAACACAC
AAAATTGATGAAGCCTAACATCCCAGGATTTGTAACCATACTGACGAAGG
TATGAAACATCCCGTGATGCCTTCTAGCTACTTTTGCTGAGTGATCCCAA
CTTAAAATTCTCCTTATTAGTTAATAATCATAGCTAACATTTAAATGATG
TGAGTATACCTTTACACAGAGAGTAAATTTTATGAATGTTTCTCTCTACC
CGTTATCTGCCACATGAACTTTCCTATCTGATGCCATGTCCCTCATTAGC
CATCCCGATCTACTACCTGTTCTATTATTGAGACGCACTCCTGTCATTCC
AACTCTTTCACCCCCCTACCTTCTTTCCCTTTTTTTCCTCTCTTTCCCAG
ATTCCTATACCCCTTTTTCCTTTTCCTAGCTTCCGCTCTTCAGCCTTTCT
TTATATTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_a21.b1 MSMg01no115_a21.b1 CHROMAT_FILE:
MSMg01no115_a21.b1 PHD_FILE: MSMg01no115_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:54 2005
         (630 letters)



>mm_chr12_112828409_112829438
          Length = 1030

 Score = 1212 bits (627), Expect = 0.0
 Identities = 627/627 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagttacatagtaagtttgaagccaacttgctacctgagaccttgcatccataa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttacatagtaagtttgaagccaacttgctacctgagaccttgcatccataa 263

                                                                       
Query: 64  aaggggtgaggggttggggtgagaaacaaggttatttaatacactacaaatagaagagta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaggggtgaggggttggggtgagaaacaaggttatttaatacactacaaatagaagagta 323

                                                                       
Query: 124 ggcagcatggtagcaatgggattactagccagttatggtctgtgattcttatcacattaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggcagcatggtagcaatgggattactagccagttatggtctgtgattcttatcacattaa 383

                                                                       
Query: 184 ggaaggtccattcttttgtttttgagacagggtaggttgtcctggaattgtgtagatcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaaggtccattcttttgtttttgagacagggtaggttgtcctggaattgtgtagatcag 443

                                                                       
Query: 244 gctgcctggaactcacagagatctgcctgcatctgcctcccaagtgttggcattaaaagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctgcctggaactcacagagatctgcctgcatctgcctcccaagtgttggcattaaaagc 503

                                                                       
Query: 304 atgtatcacaggaaggtctattctaatcctagtttgctaatagtctttcttttacatcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgtatcacaggaaggtctattctaatcctagtttgctaatagtctttcttttacatcat 563

                                                                       
Query: 364 aaattggtcagttttatggagtccttttctgtagtggacgaaataatatcctaaccaccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaattggtcagttttatggagtccttttctgtagtggacgaaataatatcctaaccaccc 623

                                                                       
Query: 424 caccccagacagggtttctctgtgtagccctggctctcctagaactcactctgtagacca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caccccagacagggtttctctgtgtagccctggctctcctagaactcactctgtagacca 683

                                                                       
Query: 484 ttgtggccttgaactcagagatccaccagcctctgcctcccaaaagttgagattaaagtt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttgtggccttgaactcagagatccaccagcctctgcctcccaaaagttgagattaaagtt 743

                                                                       
Query: 544 gtgtgctactataccaggctccctagatgttttaaaaagtaaaaattgactttgtatctc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtgtgctactataccaggctccctagatgttttaaaaagtaaaaattgactttgtatctc 803

                                      
Query: 604 taaagtacaaaatttggaagaagagcc 630
           |||||||||||||||||||||||||||
Sbjct: 804 taaagtacaaaatttggaagaagagcc 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no115_a21.g1 MSMg01no115_a21.g1 CHROMAT_FILE:
MSMg01no115_a21.g1 PHD_FILE: MSMg01no115_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:54 2005
         (238 letters)



>mm_chr12_112947427_112948064
          Length = 638

 Score =  456 bits (236), Expect = e-133
 Identities = 236/236 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggttgaataaaatccaagcatagaaagagacgctttattatgctaaacagtgctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cagggttgaataaaatccaagcatagaaagagacgctttattatgctaaacagtgctggg 377

                                                                       
Query: 61  actttttaaagttacaaggcctaatgggtcctgcccagttttaatggggtggggtttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 actttttaaagttacaaggcctaatgggtcctgcccagttttaatggggtggggtttttg 317

                                                                       
Query: 121 tttggatggtctgttttatcataaacatttttgcttgaaaaaaatctgtccccctgtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tttggatggtctgttttatcataaacatttttgcttgaaaaaaatctgtccccctgtgct 257

                                                                   
Query: 181 gttcattttagaggggggatcttgtgtccaacacacaaaattgatgaagcctaaca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gttcattttagaggggggatcttgtgtccaacacacaaaattgatgaagcctaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)