Query= MSMg01no115_e14.b1 MSMg01no115_e14.b1 CHROMAT_FILE:
MSMg01no115_e14.b1 PHD_FILE: MSMg01no115_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:12 2005
(360 letters)
>mm_chr12_98550746_98551505
Length = 760
Score = 470 bits (243), Expect = e-137
Identities = 349/435 (80%), Gaps = 81/435 (18%)
Strand = Plus / Plus
Query: 5 gaattcttctgttaaaagtgtgttttgttattttttacaagtgtggttctagcaaaagaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctgttaaaagtgtgttttgttattttttacaagtgtggttctagcaaaagaa 264
Query: 65 aaaaaatgtattccttttcttaggggagctgtttgaggcagtgtgggtggctgtaacaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaaatgtattccttttcttaggggagctgtttgaggcagtgtgggtggctgtaacaga 324
Query: 125 atgccattctttctctctctccctcgccctccctccccctccctctctccctct--ccct 182
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 325 atgccattctttctctctctccctcgccctccctccccctccccctctccctctgtccct 384
Query: 183 ctctc--------------------------------------------cctctccctct 198
||||| |||||| ||||
Sbjct: 385 ctctctctctctctctctctctctctctctctctctctctctctctgtccctctctctct 444
Query: 199 ctccctc-----------------------tctccctct--ccctctccctctctctctc 233
||||||| ||||||||| |||||||||||||||||||
Sbjct: 445 ctccctcccttgccctccctcccctccccctctccctctgtccctctccctctctctctc 504
Query: 234 tctc----------cctctcactctctctttctctctccacacttaccttttgttttctt 283
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctctctctctctccctctcactctctctttctctctccacacttaccttttgttttctt 564
Query: 284 acagttctagagacttagaaaactaggaccaagacaccggtttgttacccgctaagcaca 343
|||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 565 acagttctagaggcttagaaaactaggaccaagacaccagtttgttacctgctaagcaca 624
Query: 344 ttcttcctcatttct 358
|||||||||||||||
Sbjct: 625 ttcttcctcatttct 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space: 263601
Effective search space used: 263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_e14.g1 MSMg01no115_e14.g1 CHROMAT_FILE:
MSMg01no115_e14.g1 PHD_FILE: MSMg01no115_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:12 2005
(243 letters)
>mm_chr12_98614217_98614861
Length = 645
Score = 321 bits (166), Expect = 2e-92
Identities = 226/250 (90%), Gaps = 12/250 (4%)
Strand = Plus / Minus
Query: 1 cacttcttggcactgctttgttgtgctgttccagggagaac-agatacccctaatatacg 59
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 445 cacttcttggcactgctttgttgtgctgttccagggagaacaagataaaactaatatacg 386
Query: 60 gctgagaagtcctgcgttcaggaatataagacaacactgaattga----cttgctctgtt 115
||||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct: 385 gctgagaggtcctgcgttcagcaatataagacaacaccgaattgacttgcttgctctgtt 326
Query: 116 ttcacacactcagactcatgtaacaatgaataaaatgttatgtattcctaatgtaa--at 173
||||||||||||||||||||||||||||||||||||| |||||||||||| | | |
Sbjct: 325 ttcacacactcagactcatgtaacaatgaataaaatggtatgtattccta--g--agcac 270
Query: 174 tcctactttatttggatagtttttgataatgagatacattaaaggactggatgaagtagt 233
| |||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 269 tgctacattatttggctagtttttgataatgagatacattaaggg-ctggatgaagtagt 211
Query: 234 cagtggatca 243
||||||||||
Sbjct: 210 cagtggatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 645
Length adjustment: 9
Effective length of query: 234
Effective length of database: 636
Effective search space: 148824
Effective search space used: 148824
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
