BAC Information

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BAC

Clone NameMSMg01-115F09
Chromosome12 (Build37)
Map Location 60,844,729 - 60,845,157
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
Downstream geneEG622488, LOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115F09.T7 (MSMg01no115_f09.b1)MSMg01-115F09.TJ (MSMg01no115_f09.g1)
ACCAG326992AG326993
length745708
length of high quality
(start - end)
363 (46 - 408)430 (83 - 512)
definitionCHROMAT_FILE: MSMg01no115_f09.b1 PHD_FILE: MSMg01no115_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:15 2005CHROMAT_FILE: MSMg01no115_f09.g1 PHD_FILE: MSMg01no115_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGCTTTGAGTTTCTTTCCATTTAGGTTATTGTTAACTAGGTAC
TTGGCTTTTAGTTTTCTTTCATTATTATTTCATTATTTTACTTATTCACT
TTACATCCCAATCATTTCCCCCTCCAGTCACCCCCTTCCACAATGATTTC
CCATATCCCTACCCTTCTGCTTTGAGTGTATGGGGACCCCTGTGTACACC
CTGGTACATGAAATTTATGTGTGGCTAGGAACATTCTACTTTGTTTAATT
TGCCTTTATTGCATTAAAGTATGCCCCTTGTATCTCTAGCCTCTCCAGTC
CTTTTATTATGAAAGGATATTGGATTTTATCAAAAGCATTTTTTCTGCAT
CTTCTGTCTCAGACCCCCCGATGAAATGAGAGTCATACATGAGCTGTGCC
AGTAAATAGCTTGCCTTGAGCCCAGAGCATTTTCTTCTCTGCTCTAACTA
TTCCTAAGCCTAGGTCTGGAAGCTTCTATCCTCTGTACCACCTAATCCTT
CAAGATGACCGATTGTAACACCTAATCTTTCAGATGCTTGGTTTTTGCCC
GACTCGCTCTTCCTTGAACTCATACTCTGTCCTGTATGCCCCCAACCTTC
CGACTTTCTGACCTTTCCCTCCCCACACCCCTCTTCCCCCCCCTCTTATC
CCCCCTTTTCTCCCCTCTTCTTCACCCCCCTCTATCCCCCTCCTC
CTTTCTTTTTCGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGTGAGGTAAATTCATGG
CATCTTCACCACGAGGTCTGCCTCCTCTGCCTTATAGGGCTTCACGATTC
ATATACCGTAGATGCTCAATGGATGCTTATGCCACTGATGGACAGAATTA
GAGTTAGTGAAACACAGAATGTCGTGTTTTCCAGAGCAAGCTTCCGAGCA
GAGGTACCTTCAGGACAGAAACTGATTACTAAGGGTTAGCTTGCCTTATT
AAGCTTTTCACGGGCTGCCAGGCTGTAACCTGGAATAGTGACATTGAGTG
GTATGCACTTTCTGACCAAGGAGGCCCAGAGCTCCCTTAAGAACATTTGT
CTGCAAATTAGATTTGTCAGGTCACCAGTTCAAATAAAGCTCCCCTTTTC
CCTCCCACTGCTCTTTGGCACATTCTAATGAGAGCCATAGCTCCCGAGTC
ATCGCTTCAGAACTCACACCTAATATGAAAGAAATTGAAAGCTGAAAGGG
AACCTTGGGGCTCATGAACAGCGTTTCTGCCAGGCACGACACGGATCTTT
TCCTTATACCGCATCTCCCATGAGAAATATTTCTGACTGTTGCCTGCTTT
CCGGTTGAGAAAGCCGGCTCAAGGAGATGCCCCCATTGTCATCCCTGCCT
ATCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_f09.g1 MSMg01no115_f09.g1 CHROMAT_FILE:
MSMg01no115_f09.g1 PHD_FILE: MSMg01no115_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:15 2005
         (430 letters)



>mm_chr12_60844529_60845359
          Length = 831

 Score =  752 bits (389), Expect = 0.0
 Identities = 419/429 (97%), Gaps = 1/429 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgagg-taaattcatggcatcttcaccacgaggtctgcctcctctgccttatagggct 59
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtgagggtaaattcatggcatcttcaccacgaggtctgcctcctctgccttatagggct 260

                                                                       
Query: 60  tcacgattcatataccgtagatgctcaatggatgcttatgccactgatggacagaattag 119
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacgattcatatatcatagatgctcaatggatgcttatgccactgatggacagaattag 320

                                                                       
Query: 120 agttagtgaaacacagaatgtcgtgttttccagagcaagcttccgagcagaggtaccttc 179
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 agttagtgaaacacagaatgtcgtgttttccagagcaagcttctgagcagaggtaccttc 380

                                                                       
Query: 180 aggacagaaactgattactaagggttagcttgccttattaagcttttcacgggctgccag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggacagaaactgattactaagggttagcttgccttattaagcttttcacgggctgccag 440

                                                                       
Query: 240 gctgtaacctggaatagtgacattgagtggtatgcactttctgaccaaggaggcccagag 299
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgtaatctggaatagtgacattgagtggtatgcactttctgaccaaggaggcccagag 500

                                                                       
Query: 300 ctcccttaagaacatttgtctgcaaattagatttgtcaggtcaccagttcaaataaagct 359
           |||||||| |||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 501 ctcccttaggaacatttgtctgcaaattagatttgtcaggttagaagttcaaataaagct 560

                                                                       
Query: 360 ccccttttccctcccactgctctttggcacattctaatgagagccatagctcccgagtca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccccttttccctcccactgctctttggcacattctaatgagagccatagctcccgagtca 620

                    
Query: 420 tcgcttcag 428
           | |||||||
Sbjct: 621 ttgcttcag 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 831
Length adjustment: 9
Effective length of query: 421
Effective length of database: 822
Effective search space:   346062
Effective search space used:   346062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)