Query= MSMg01no115_l03.b1 MSMg01no115_l03.b1 CHROMAT_FILE:
MSMg01no115_l03.b1 PHD_FILE: MSMg01no115_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:42 2005
(471 letters)
>mm_chr12_47319588_47320458
Length = 871
Score = 870 bits (450), Expect = 0.0
Identities = 465/470 (98%)
Strand = Plus / Plus
Query: 2 gaggaactggaggaggagaattggaaatgatgagtataaatcaataaagatactttgtta 61
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaggaaccggaggaggagaattggaaatgatgagtataaatcaataaagatactttgtta 261
Query: 62 caaaatacagaagttttgctacagagagtatagcaatgaagcaatggatgtatggaattg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caaaatacagaagttttgctacagagagtatagcaatgaagcaatggatgtatggaattg 321
Query: 122 agcaatatatttgtcatcaaaataaatgataatatgtatgatgagatgaaagatgctgtg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agcaatatatttgtcatcaaaataaatgataatatgtatgatgagatgaaagatgctgtg 381
Query: 182 acataattctgtcttagttatggctttattgcagtataaaatattatgacctaagcaact 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acataattctgtcttagttatggctttattgcagtataaaatattatgacctaagcaact 441
Query: 242 tggacaagaaagggtttatttcagctaaaagatctcaggccacagtctatcattggggaa 301
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 442 tggacaagaaagggtttatttcagctaaaagatctcaggccacaatctatcattggggaa 501
Query: 302 gtgagggcaggaggcaggaactgaagaagaggtcatggaagtgtactgcttacttgcttc 361
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtgagggcaggaagcaggaactgaagaagaggtcatggaagtgtactgcttacttgcttt 561
Query: 362 cttctcatagcttcctcagccttccttcttatacaactcagaacaatctacaatgagatg 421
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 562 cttctcatagcttcctcagccttccttcttacacaactcagaacaatctacaatgagatg 621
Query: 422 gaccctctcatatcaactaatccaaaaaatgcccacaggcctgactacag 471
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaccctctcatatcaactaatccaaaaaatgcccacaggcctgactacag 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_l03.g1 MSMg01no115_l03.g1 CHROMAT_FILE:
MSMg01no115_l03.g1 PHD_FILE: MSMg01no115_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:42 2005
(240 letters)
>mm_chr12_47466859_47467499
Length = 641
Score = 404 bits (209), Expect = e-117
Identities = 233/243 (95%), Gaps = 5/243 (2%)
Strand = Plus / Minus
Query: 1 agaaaggtgtgaactaagtcagaccttgtctttctagcaccagcttcatgtccataggcc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 agaaaggtgtgaactaagtcagaccttgtctttctagcacccgcttcatgtccataggcc 382
Query: 61 tctaataaaaaataacaactgagttta---ttttttttatgtgtagatctgtagatatga 117
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 381 tctaataaaaaataacaactgagtttatttttttttttatgtgtagatctgtagatgtga 322
Query: 118 atgtgtggttctttcaaggacattctaatcagaaagaaaaaaaatgaggatttcccgaaa 177
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 atatgtggttctttcaaggacattctaatcagaaag--aaaaaatgaggatttcccgaaa 264
Query: 178 agaaaagaaaacacctaagtaccaagccaggagcacatttaagtagtaaccaaagccttt 237
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 263 agaaaagaaaacacctaagtaccaagtcaggagcacatttaagtagtaaccaaagccctt 204
Query: 238 taa 240
|||
Sbjct: 203 taa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 641
Length adjustment: 9
Effective length of query: 231
Effective length of database: 632
Effective search space: 145992
Effective search space used: 145992
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
