BAC Information

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BAC

Clone NameMSMg01-115N13
Chromosome12 (Build37)
Map Location 102,442,044 - 102,442,342
singlet/doubletsinglet
Overlap genenone
Upstream geneCalm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik
Downstream geneMylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115N13.T7 (MSMg01no115_n13.b1)MSMg01-115N13.TJ (MSMg01no115_n13.g1)
ACCAG327374AG327375
length752753
length of high quality
(start - end)
557 (46 - 602)299 (83 - 381)
definitionCHROMAT_FILE: MSMg01no115_n13.b1 PHD_FILE: MSMg01no115_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:54 2005CHROMAT_FILE: MSMg01no115_n13.g1 PHD_FILE: MSMg01no115_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGAAGGAAAACTCCAACACAAGGAGGGTACCTACACCAAACAAA
CAAACAAAAAAAACAACAAAACAAACAAACAAACAAAAAAAACCAAAACA
AACAAACAAAAAAAAAAACCCAAGATAGTGATCATCTCACAACAAAGCCA
AAAGGAGAGAATCACATGCATATAATGCCACCTATAAAAACAAATGTGTT
TTTTATTAGATATTTTCTTTATTTACATTTCAAATGCTATCCCGAAAGTT
CCCTATACCCTCCTCCCGCACTGCTCCCCTACTAAAAACAAATGTAACAG
AAACTAACAATCAGCTGCACTTAATATCTCTCAATATTAATGGACTCAAC
TCACCTATACAAAGACACACACTAAGAGATTGAAAACACAAACAGATCCA
GCACTTTGCTGCATACAAGAAACACACTTCAACTACAAAAAAAACAGAAA
CTACCTCAGAGTAAAAGGCTGGAAGAAAGGCTTCCAAGCCAATGGTCCAA
AGAAAAAAGCTGGAGTTGTCATCCTAATATCCAATAAAATAGACTTTCAA
CCAAAAGTTATCAAGCAACATGAGAAAGTACACTACATACTCATCAAAAG
AAAAATCCAGCAAAATATGTCTCAATTCTGAACATCTATGCACCAAATGC
AAGGGTATGCACACTCATAAAAGAAGCTTTACTAAAGCCCAAAACCCCCC
TG
NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAAGGTAGCAAAATG
ACACATGATAGTGTGGAGGAGGTAACTTGCAGAGTTTGTGAGGGAAGCAG
TGCATAGTTCAGTCTGACAATTCAACCATTTCATAAAACTGGGAATTTGT
GTATATCAAAGGTACTTGCATATGAGAGAAAGTAATATTGATGTCAAACT
ACGATCACTGGGAGGATATGCAAACTGGTAATGATATCCTTACATAGGCA
AATTGAGAATAACGCTGAAACAATCATATTATACAAACAATATTTGGCGG
AAAGGATATTTCCCCCCTCTTCTTATATAAATCTAATAAACTACGTGGTA
CAGTGATATTCCATATCTTGTAATTTCCCCCTTTATGTTTACATATTCGC
GAGACCCTACTTCTCCCTATTCTGTCATCCCCTGCGTTTTATTCCTTTAA
CCTAACTCTTTTCCCCCTTTTCCCCCTCCCATCCCATTTCACTCCCTTTT
TTTCCCTTTCACCTCTTCCTCTCTCCATTCCCCCTTTTTTCCTCTCTTCC
TCGTCCCTTTTTCCCCTTTCCCTTTTTCTCCCATCCTCTATTTCCTACCC
CCCCTTTTTTTCCCCCTATCCTTCTTTTTTCCCCCTTCCCCATTCTCCCC
TCCTTTCCTCCCCCTCCTCTTTTTCTTTTGCCCCGCTTCTTTATTTTTCT
CTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_n13.g1 MSMg01no115_n13.g1 CHROMAT_FILE:
MSMg01no115_n13.g1 PHD_FILE: MSMg01no115_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:54 2005
         (299 letters)



>mm_chr12_102441844_102442542
          Length = 699

 Score =  540 bits (279), Expect = e-158
 Identities = 294/299 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaaggtagcaaaatgacacatgatagtgtggaggaggtaacttgcagagtttgtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaaggtagcaaaatgacacatgatagtgtggaggaggtaacttgcagagtttgtgag 260

                                                                       
Query: 61  ggaagcagtgcatagttcagtctgacaattcaaccatttcataaaactgggaatttgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagcagtgcatagttcagtctgacaattcaaccatttcataaaactgggaatttgtgt 320

                                                                       
Query: 121 atatcaaaggtacttgcatatgagagaaagtaatattgatgtcaaactacgatcactggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatcaaaggtacttgcatatgagagaaagtaatattgatgtcaaactacgatcactggg 380

                                                                       
Query: 181 aggatatgcaaactggtaatgatatccttacataggcaaattgagaataacgctgaaaca 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 aggatatgcaaactggtaatgatatccttacacaggcaaattgagaataacgctgaaaca 440

                                                                      
Query: 241 atcatattatacaaacaatatttggcggaaaggatatttcccccctcttcttatataaa 299
           ||||||||||||||||||||||| | ||||||||||||| ||||| |||||||||||||
Sbjct: 441 atcatattatacaaacaatatttagtggaaaggatattttcccccacttcttatataaa 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)