BAC Information

Click to search

BAC

Clone NameMSMg01-115O24
Chromosome12 (Build37)
Map Location 13,697,267 - 13,697,697
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396
Downstream geneLOC238091, EG633789, LOC668481, AW125753, LOC100043256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115O24.T7 (MSMg01no115_o24.b1)MSMg01-115O24.TJ (MSMg01no115_o24.g1)
ACCAG327443AG327444
length1,521709
length of high quality
(start - end)
---585 (82 - 666)
definitionCHROMAT_FILE: MSMg01no115_o24.b1 PHD_FILE: MSMg01no115_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:01 2005CHROMAT_FILE: MSMg01no115_o24.g1 PHD_FILE: MSMg01no115_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTTGTTATACCGTCACTCGGTATACACCGCGCTCACCTAACCATATAT
ACGGGGATGATTCTCGACACGACANAGTTCGATACCGACACAGCNGCTCG
CGCTCTATACACAGANCGCGTCACGCTGCTCGCGCTGCGTCTTTGTATGT
TAGTATTATAGCCGATATATNTTGTACGCTGNATGAAAGTGTATTNNCGC
TNGGTGGNGCAGGGCGTCTCTGTAACGCGCTCACTCTATCTCGTCCGCGA
CACATATTCGTATCACANTGTACGCGCGGACACCGAAGCGCTTCTCGACG
CTATTATATAACCTACCATGACTGACCCGCCAGCGTGACGCTGCACCGAG
CGCCTCACTAGATACATTAGCAGTATAGACGNCGTCGCGACCANTGACGC
GANCTCGAGCGCGCATCGTATAGCGTGCGCGANGCGTTAGTCTATATNTA
TATATACGAGNTCGCACGTAGACACAGTAAGTCGATATAGCGTAGATNCG
ACGCCGTCGGCTGTGCTAGCATACAGAGAGTAAGATAACACTGAGCAGGC
AGTCGACAGAGCACGAGTGCGGAGGTGAGTCGATANTACACGCGCGCGCG
CGCGAGCGCGATAGTGACGACACATCACGCAGTCGGACGAGGACCGCACG
CGACGAGATAGTCTGTCCCGCGATAGCGCCTACACGCCTTCTACGCGATA
ACGTACGTGTTGCTACAGCATGTTCATGTATTTNATGCGNAGTCTGAATA
TAGATCGGCGGGCACGCGAGAAGAGCGTCGCGGCGCGCAANGATGCTATT
GTGAAGAGAGTCGGCTATAGGTGCGCNAGAATAACGCTGCTTTCTTAATA
CACACAGNAGTAATAATTGCCGCTGTCACGCACCAGCAACATATACGCGC
AATAAGNCGCGCGCTGAATACAGCGCGCCTGTATTATGAAGTGCAGAACG
AACGTAGCTGAGTCCATATCGCATCATATTATATCGCGCGTATATTAGCG
AATCGCGCGCCGATCGTACACTCGAATCCGACGCTCGTAATTAGCGCCGT
ACTAGAAATCTCGTATAATATACGACCGATAGCCTATCAGTCTATACACA
TGACGCGCGATCGTGTCGCGTATTCTATGCTGAGTGCGAGCAGCGTACAC
GCTGAACATGCAGTTATATATAGCAGATCCCACGATCCGCTCTCGCACCG
CCAATGCGAGAGACTAACGAGGATCGCTAGAGTACATCGCGATGCGAGCA
CGTTGCATTCAAGCGACTGCCGGATGCGACGCGCATATGCGTGTGCGTGN
TGCTAGCGCGTGTGTCTCGTGCTNTCGCGAAGGCGTNATTATACATNTNT
AGAAAGGANCGCGTATCGTATAATATAGTTGTAGTCGCGTATCGCGACGA
CGCTGTGACGCACGAGCAGCAAGCATACACAATGATACCTGANACTCTNA
TNACGATATAGANCGACCTCCGCGTATANGAGCGACGNTGTGATATGTCG
ACACGTCCAGACGACGTAGCG
NTTTTTCTTCGATGATAGGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCCCAGAGCTCCTGAG
GGAAATCAAAGATAAGAACAGATTTAAGAGACAAGGGAGATTAGTAAGAC
AGGGCCATACTTCCCCAGCGCCCAGTAATCAAAACTATTATAACTTCAAA
TGCTAAGTCAAAGTCTCCAAAGGTTAAGAAATCAACTCCATAATTAATGA
CAGGTTAATGGGCTCCATTATCCTGTAACAATTGAAAATAAAATCTCAGT
GTTCTCATTTACCCAGAAAACAAAGATAATGAAAAGTATTTAAATACTTT
CCTCTAAGGGAGACTTGTCCAGAATTCAGGGCAAGACGATGAAACTCTAC
CCTGGGCCCTTTGGAAAGAGCCATGTGCTTCCTTCCTTGACATAAAAACA
GGAGACTTTTTCATGTGTGCACAAAGTCACAAAAGTAGTCCTGTGTGTGC
ACACACACACACCCACTCCCTCATGCCACACTTTTTTTTTAATTTTGTAT
TTTTATTTTTTTATGTTTTAATGTCTTTTTAAAATATTTTTTATCTTTTT
TTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATAC
CAAAAGTCCCCCATACCCATTTACCCCCATTTCCCCATCCAACTACTCCC
TCTTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_o24.g1 MSMg01no115_o24.g1 CHROMAT_FILE:
MSMg01no115_o24.g1 PHD_FILE: MSMg01no115_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:01 2005
         (585 letters)



>mm_chr12_13697067_13698051
          Length = 985

 Score =  764 bits (395), Expect = 0.0
 Identities = 422/431 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaccccagagctcctgagggaaatcaaagataagaacagatttaagagacaagggagat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 631 ttaccccagagctcctgagggaaatcaaagataagaacagatttaagagagaagggagat 572

                                                                       
Query: 61  tagtaagacagggccatacttccccagcgcccagtaatcaaaactattataacttcaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tagtaagacagggccatacttccccagcgcccagtaatcaaaactattataacttcaaat 512

                                                                       
Query: 121 gctaagtcaaagtctccaaaggttaagaaatcaactccataattaatgacaggttaatgg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gctaagtcaaagcctccaaaggttaagaaatcaactccataattaatgacaggttaatgg 452

                                                                       
Query: 181 gctccattatcctgtaacaattgaaaataaaatctcagtgttctcatttacccagaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gctccattatcctgtaacaattgaaaataaaatctcagtgttctcatttacccagaaaac 392

                                                                       
Query: 241 aaagataatgaaaagtatttaaatactttcctctaagggagacttgtccagaattcaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaagataatgaaaagtatttaaatactttcctctaagggagacttgtccagaattcaggg 332

                                                                       
Query: 301 caagacgatgaaactctaccctgggccctttggaaagagccatgtgcttccttccttgac 360
           ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 331 caagaggatgaaactctatcctgggccctttggaaagagccatgcgcttccttccttgac 272

                                                                       
Query: 361 ataaaaacaggagactttttcatgtgtgcacaaagtcacaaaagtagtcctgtgtgtgca 420
           || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 271 attaaaacaggagactttttcatgtgtgcacaaagtcacaaaagtagtcctgtgcgtgcg 212

                      
Query: 421 cacacacacac 431
           ||| |||||||
Sbjct: 211 cacgcacacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)