BAC Information

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BAC

Clone NameMSMg01-116E03
Chromosome12 (Build37)
Map Location 39,949,751 - 39,950,071
singlet/doubletsinglet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116E03.T7 (MSMg01no116_e03.b1)MSMg01-116E03.TJ (MSMg01no116_e03.g1)
ACCAG327682AG327683
length691687
length of high quality
(start - end)
244 (87 - 330)529 (88 - 616)
definitionCHROMAT_FILE: MSMg01no116_e03.b1 PHD_FILE: MSMg01no116_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:28 2005CHROMAT_FILE: MSMg01no116_e03.g1 PHD_FILE: MSMg01no116_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTACTCTNTTCATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTACCTTCCCAAAAAAAGCAGCCGGAAAGAGGC
TGCAATGCCATCTGGAGAGAACACAGGAGACTTGAAAGCCTGAGCGCACA
GTCATCCATGCCCTCTTATAAGGCTAGGCCTCCTCAGTAAGGTCACAGCT
CCTAATAATACCACTTCCATGCACCAAACATGTTTAAACCACCACAGCCC
CTTCTTCATTTCCTCTCCTTTACTTCCTTTCCTCTTGGTCATAGGCCACC
TTATGTAGGTAATAGGAATTTTTTTTGTTTATTCGTTTGTTTGCTTATTT
ATTTATTTATTTATTTATTTATTCATCACTTCCCCTCATATATTGTATCC
TGAGAGCAGTGTCCCTTCCCTCCATCCACTAACCTTCCTGATAAGTGTTT
TCCTTCTCCCAGACCCACCTCTTCTTCCCTCAGAGGAGAGCAGGTCTCCC
AGGGACATCAACCATGCATGGCATAACAAGCTACAGTAAGATCAGGCACC
TTCCCTCACGTTAAGGGTGGACAAGGCAAGCCAGTAAGAGGAAAAAGTTC
TCACAAGCAGGCAAAAACAGTTAGGGACAGCATCTGCTCCCACTGTTATA
ATTTCTACAAGCTATTCTATCTAAATATATATGCACAGGAC
CTACTCAATTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATGATAAGT
ATTTTTGGTATGATTTTAGAAATAGAAAATTAAAGCCTATCCAATATCAG
AAATAAATTTTGCAGGTGTCTATTTTGTAACTGGCAGTTAATAGTCAGAA
AATGATAGAACTATTTTTATTAATATGTATCATTAATAATTTTGTTCATA
AATTAAAATAAAATTTTAAAGCAGAGACTTGGCATTTTAGTTTTTCTTCC
CTTTCAGGTTTTAAATATAAATTTTAATAATATTTTGTTTTAGAATACCT
TCTGAAATGTTTTACTCTTTTACTGTATTTTTTCTCACTTGATTAGAAAT
CATATTTGTTATAGTTATATGCATTCTATTTAAATTACTTGTTTATACTT
ATTTTATTTATTTATTTTACTTATATTTATTTTTCTTATATTTACTTATT
CTGCTTGTGTTTATTTATTTATGTATAACTCTGACCTGATTTTTTTCTTT
TTAATTGGCAAATAAAATGAACGTAATTTTTTGCTCAACCTGACATAATA
TATTTGTATGAATGTATCATGTATATATATATATATATATATATATATAT
ATATATATATATGTTTGTATACATTTTACCCGTCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_e03.g1 MSMg01no116_e03.g1 CHROMAT_FILE:
MSMg01no116_e03.g1 PHD_FILE: MSMg01no116_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:28 2005
         (529 letters)



>mm_chr12_39949751_39950679
          Length = 929

 Score =  574 bits (297), Expect = e-168
 Identities = 315/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcatgataagtatttttggtatgattttagaaatagaaaattaaagcctatccaatat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tttcatgataagtatttttggtatgattttagaaatagaaaattaaagcctatccaattt 262

                                                                       
Query: 61  cagaaataaattttgcaggtgtctattttgtaactggcagttaatagtcagaaaatgata 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaataaattttgcaggagtctattttgtaactggcagttaatagtcagaaaatgata 202

                                                                       
Query: 121 gaactatttttattaatatgtatcattaataattttgttcataaattaaaataaaatttt 180
           | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ggactatttttattaatatgtatcattaataattttgttcataaattaaaatgaaatttt 142

                                                                       
Query: 181 aaagcagagacttggcattttagtttttcttccctttcaggttttaaatataaattttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 aaagcagagacttggcattttagtttttcttccctttcaggttttaaatataaattttaa 82

                                                                       
Query: 241 taatattttgttttagaataccttctgaaatgttttactcttttactgtattttttctca 300
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 81  taatattttgttttagaatacattctgagatgttttactcttttactgtattttttctca 22

                                
Query: 301 cttgattagaaatcatatttg 321
           |||||||||||||||||||||
Sbjct: 21  cttgattagaaatcatatttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)