BAC Information

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BAC

Clone NameMSMg01-116F15
Chromosome12 (Build37)
Map Location 16,980,446 - 16,980,955
singlet/doubletsinglet
Overlap geneRock2
Upstream geneLpin1, Ntsr2, Greb1, E2f6
Downstream genePqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116F15.T7 (MSMg01no116_f15.b1)MSMg01-116F15.TJ (MSMg01no116_f15.g1)
ACCAG327754AG327755
length707711
length of high quality
(start - end)
512 (56 - 567)53 (252 - 304)
definitionCHROMAT_FILE: MSMg01no116_f15.b1 PHD_FILE: MSMg01no116_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:35 2005CHROMAT_FILE: MSMg01no116_f15.g1 PHD_FILE: MSMg01no116_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAANAAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCCCATCTCCTTAATTTGTCTTTCTTTAAATGATA
ACATTTAACTAACATCCACTCACTCCAACATGCTGTTTAGATGCAGTAAA
AAATAAACTGCTGCATGAACTATAATTCACCTTTAAGGCATTTTTCAAAG
AGCTTGTGATTATATTTGCTAGATTGTTTGATTTTTGCCAATTTTCCAGA
AACAAAGCACTATGTTCTATATCCTTGAAAGTGCATGGCTTCATCTATTT
TTCAGACATTTCTGTAGTTCTATATCAAGAGTGACAGAATATAAAAATAC
ATGACCCGTTTCCTAGAATGTATTGAGGTTTTCACGTCCACGGTGTACTA
AGCCTTCAGAGAACACATGAAACAATTTGGCTTGGTTTTCACTCTGAAAA
GTCTCACAGGTGAAATGCCTGGAGACTCCCATTTGTCTTCTAAACTCACT
GATCTCTGTAGACTCCAGCTTTCTTGTCTACATGAGGGATAAAATTCTGT
TGTGTGGAACTGTACAGACATATAGAACGTAAACATCTAGTACAGTTAAT
GCGTACCAGTTTAAACCTGTAACGATTTGTATTATTAGAATATCCTCTTA
TAATGGCACCCCCTCTGCCAATTTCATTTGAAAAATGGGATCAAATTTAT
TAGCACA
TCCCNNCGCCGATGCTGTGGGAGGCCTGGCGGCCGCCTTTTCGTACCATG
GAGGTGACCTATAGAATCTCAAAAAAAATCTGCCCCACGGCCACTTCACA
TGTCTGCGGTGGCAGGCCCTCAGTACCCCTTACTGGGCCAGGCCAATGAA
GAAAGGAGACGGATGCAATAAGATCCCTGCTCCTTCATGGGGCGTGGGGG
GGGGTGCACGTGGGCACAGTGTCACAGTAGAGAGATTCTAGCAGGAAGGA
GAAGTGCGTCTTAAACTGGAAACAAGCAGGTTGAGATCTTGGCACGAATG
TAGTTGAGAGATGGCAGTGGTGTTTTCTTTTTGGCAGAGAAGGGGGTTAG
AACCTCCTAAAGTTCTTTTTTTATCCCCCCGCCCCCTACGAGCTGAAAAG
CACCCATATGCCAGGATCTAGAGAGTTAGGAAAAAGAACGAAAAGCAGTG
GGTCGCAGTTTCAGGATTTCCTGACCCCAATAATTCCCCCGCATTGCCCA
GACTCTATAACTGGGACTCCTGTTCTGGCTTGTTACCGATTACTCCTAGA
CTGCCTACGAGTTCTGTAAAACACTGTCGTACTGGTTGCCTGGCTCATGT
TACCTTATTACTGGGTTATCTCCTGTTTCTTAGGCTCCTGTGAAGGTTCC
TCTCTATATCACCTGTTCTGATATGTCTTTACCCTCATCCCTTGTATACC
TTATCGACCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_f15.b1 MSMg01no116_f15.b1 CHROMAT_FILE:
MSMg01no116_f15.b1 PHD_FILE: MSMg01no116_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:35 2005
         (512 letters)



>mm_chr12_16980243_16981155
          Length = 913

 Score =  963 bits (498), Expect = 0.0
 Identities = 507/510 (99%), Gaps = 1/510 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcccatctccttaatttgtctttctttaaa-tgataacatttaactaacatcc 62
           |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 204 ggaattctcccagctacttaatttgtctttctttaaaatgataacatttaactaacatcc 263

                                                                       
Query: 63  actcactccaacatgctgtttagatgcagtaaaaaataaactgctgcatgaactataatt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actcactccaacatgctgtttagatgcagtaaaaaataaactgctgcatgaactataatt 323

                                                                       
Query: 123 cacctttaaggcatttttcaaagagcttgtgattatatttgctagattgtttgatttttg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacctttaaggcatttttcaaagagcttgtgattatatttgctagattgtttgatttttg 383

                                                                       
Query: 183 ccaattttccagaaacaaagcactatgttctatatccttgaaagtgcatggcttcatcta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaattttccagaaacaaagcactatgttctatatccttgaaagtgcatggcttcatcta 443

                                                                       
Query: 243 tttttcagacatttctgtagttctatatcaagagtgacagaatataaaaatacatgaccc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttttcagacatttctgtagttctatatcaagagtgacagaatataaaaatacatgaccc 503

                                                                       
Query: 303 gtttcctagaatgtattgaggttttcacgtccacggtgtactaagccttcagagaacaca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtttcctagaatgtattgaggttttcacgtccacggtgtactaagccttcagagaacaca 563

                                                                       
Query: 363 tgaaacaatttggcttggttttcactctgaaaagtctcacaggtgaaatgcctggagact 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaaacaatttggcttggttttcactctgaaaagtctcacaggtgaaatgcctggagact 623

                                                                       
Query: 423 cccatttgtcttctaaactcactgatctctgtagactccagctttcttgtctacatgagg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cccatttgtcttctaaactcactgatctctgtagactccagctttcttgtctacatgagg 683

                                         
Query: 483 gataaaattctgttgtgtggaactgtacag 512
           ||||||||||||||||||||||||||||||
Sbjct: 684 gataaaattctgttgtgtggaactgtacag 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space:   453306
Effective search space used:   453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)