Query= MSMg01no116_f18.b1 MSMg01no116_f18.b1 CHROMAT_FILE:
MSMg01no116_f18.b1 PHD_FILE: MSMg01no116_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:35 2005
(521 letters)
>mm_chr12_39692019_39692939
Length = 921
Score = 992 bits (513), Expect = 0.0
Identities = 519/521 (99%)
Strand = Plus / Minus
Query: 1 ataacttgtactttaaaacatattttagttgtattttttctttcttgacagcttacttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ataacttgtactttaaaacatattttagttgtattttttctttcttgacagcttacttag 591
Query: 61 ctccaaagcaagaacaaatcatcaagggcatggcttctactacaccattaaatttcattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctccaaagcaagaacaaatcatcaagggcatggcttctactacaccattaaatttcattt 531
Query: 121 tcatcaacaagatatatatttttaaaattatacttttaaaaaatgaaatactattatcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tcatcaacaagatatatatttttaaaattatacttttaaaaaatgaaatactattatcta 471
Query: 181 aatagaaaatggaaacctatacatcacttttatactgaacatttagtttagcattttaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aatagaaaatggaaacctatacatcacttttatactgaacatttagtttagcattttaca 411
Query: 241 tctacccaaatatatgtatgtatatacctattttttaagaatgtttggctccttgggcca 300
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 410 tctacccaaatatatgtacgtatatacctatttttaaagaatgtttggctccttgggcca 351
Query: 301 caaccacaattagaagtaacccattcttggtactagatgattcattagatgaaaaagatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 caaccacaattagaagtaacccattcttggtactagatgattcattagatgaaaaagatg 291
Query: 361 agcagtgggagccagatatgtatatatgttaggaagcttttactatattgagttcccatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 agcagtgggagccagatatgtatatatgttaggaagcttttactatattgagttcccatg 231
Query: 421 gtagtcctcaaatgacacttaactttagctgtctctccttatattcccttggttgtcccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gtagtcctcaaatgacacttaactttagctgtctctccttatattcccttggttgtcccc 171
Query: 481 ctttcctctcatcatccacacttgataatcctgttccagtt 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ctttcctctcatcatccacacttgataatcctgttccagtt 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_f18.g1 MSMg01no116_f18.g1 CHROMAT_FILE:
MSMg01no116_f18.g1 PHD_FILE: MSMg01no116_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:36 2005
(176 letters)
>mm_chr12_39543362_39543937
Length = 576
Score = 290 bits (150), Expect = 3e-83
Identities = 171/180 (95%), Gaps = 4/180 (2%)
Strand = Plus / Plus
Query: 1 aattatttgtttcattatttactttgtttcatttaaattgaccaataggttgttttcctt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aattatttgtttcattatttactttgtttcatttaaattgaaaaataggttgttttcctt 260
Query: 61 cacaaaaatattggctgcctcttaaactgtttttttttaatatacgtgttctttcattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaaaaatattggctgcctcttaaactgtttttttttaatatacgtgttctttcattct 320
Query: 121 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgt----atgtgtgtgtgt 176
|||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||||
Sbjct: 321 gtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtatgtatgtgtgtgtgtatgtgtgtgtgt 380
Score = 103 bits (53), Expect = 8e-27
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 123 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtatgtgtgtgtg 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtatgtgtgtgtg 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space: 95424
Effective search space used: 95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
