BAC Information

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BAC

Clone NameMSMg01-116G10
Chromosome12 (Build37)
Map Location 89,445,929 - 89,446,422
singlet/doubletsinglet
Overlap genenone
Upstream genePomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315
Downstream geneEG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116G10.T7 (MSMg01no116_g10.b1)MSMg01-116G10.TJ (MSMg01no116_g10.g1)
ACCAG327791AG327792
length719713
length of high quality
(start - end)
490 (81 - 570)413 (75 - 487)
definitionCHROMAT_FILE: MSMg01no116_g10.b1 PHD_FILE: MSMg01no116_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:39 2005CHROMAT_FILE: MSMg01no116_g10.g1 PHD_FILE: MSMg01no116_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTTTATTATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCCAGAGGATCC
GCGGAATTCAGAAGTTACACTCCAGAGAACAAATAACCCTATTTAAAAAT
GGGGTACAGAGCTAAACAAAGAATTATCAACTGAGGAATCTTAAAATGGC
TGAGAAGCATCCAAGGTAGTTCGACAGCATTAGTCATCAGGGAACAGGTT
ATTAAAATAACCCTGATAAAATAAAATAACCAGTGGACTCACTTAGGGGT
AAGAAAGCTCATGGAGACATTTTCCAAGACTTAAGTACTATGTACCAGGT
TTAAAATACCTTGTGGAGCAGGTGGTGCACAAATGTGTGCCCTCCCAAAA
AGTCAATGTCTGCTGCACTATGGTGGACCCAAGGAAGAGGTACTGGGGAG
ACAGACCCAGTGTTTCCTGGGAGGTAGATTTTACTAAGGTAAGACCTGGA
AAATATGGGTATAAATACCTTCTAGTTTTTGTGGCTATGTTCTCCAGATG
GGTAGAAGCTTTTCCCTGTTTAAAAAAAAATATTAGACTGCTCAGATGGT
CGTCAAGATTATTGAAGAATTTTTTCCAAGGTTTTGAGTGCCAAAAGCAA
TAGGGTCAGATAATGGCCCTGCCCTTTGTTGCCCAGGTAAGTCAGGGGGT
GGCCAATTATTTATAGTGTGAATGGAAATTACGTTTTGGCGGACAGACCT
TCTAGCTCAAGACTGGTAG
TTTACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAATACTACAACACCCTCGGCCAAGC
ATATTCAGAACACAAAAGTTGCTGTTGGCTGCATCTTTGCAGGCAGCATC
TTTGCAGGCAGAGAATTTTTGTGGATCTTTGTGGCCCCACCAGCCAACAC
CTACAACTTCCTCTAGCACATGTGGTGTTTGTTGTTCTGGGTGTCCTGTG
TTGGTTAAACCTGCTTTTCCAAGAACCAATGCTAGTGAACTGATAAAAGC
TCACTGAAGCTATGCTGTTGGGGTTTGTTTAAAATACATCCACCAGTTTT
ACAGAAATGAATTGCATCGAATTCAAGTCTTCTTGCTTGTGCAGTGAGTA
CTGCACGGAGTGAGCAACCTCCTCCTCAGCCCTGTCAGCTCACTGCAACT
TCCTTACAACTTTGAGTTTCTAGGGTTTAAAACTGAGACAGAGAGAAGTT
AGGTCTTCTGAAGGTTTGGTTTGTTCTTTCTATGTTTTGTAAGTTGCTGG
GGAGGAGGGGCTGAAACTCAGGTGACTTGCTAAGTTCTAGAGGCAGATGA
ACTACGACACTCATGAAAATCTAGCACAAGGGTATCAAACCCACATCCCA
CATAACTTAAGGAAAACATTGCTTGCAGTAAGTCATTTTAAAATAATATT
TTGGGGGGGCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_g10.b1 MSMg01no116_g10.b1 CHROMAT_FILE:
MSMg01no116_g10.b1 PHD_FILE: MSMg01no116_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:39 2005
         (490 letters)



>mm_chr12_89445729_89446618
          Length = 890

 Score =  909 bits (470), Expect = 0.0
 Identities = 487/494 (98%), Gaps = 4/494 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataaccctatttaaaaatggggtacagagctaaacaaagaattatcaactgaggaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 aaataaccctatttaaaaatggggtacagagctaaacaaagaattctcaactgaggaatc 260

                                                                       
Query: 61  ttaaaatggctgagaagcatccaaggtagttcgacagcattagtcatcagggaacaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaatggctgagaagcatccaaggtagttcgacagcattagtcatcagggaacaggtt 320

                                                                       
Query: 121 attaaaataaccctgataaaataaaataaccagtggactcacttaggggtaagaaagctc 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 attaaaataaccctgataaaataaaataaccagtggactcccttaggggtaagaaagctc 380

                                                                       
Query: 181 atggagacattttccaagacttaagtactatgtaccaggtttaaaataccttgtggagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggagacattttccaagacttaagtactatgtaccaggtttaaaataccttgtggagca 440

                                                                       
Query: 241 ggtggtgcacaaatgtgtgccctcccaaaaagtcaatgtctgctgcactatggtggaccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtggtgcacaaatgtgtgccctcccaaaaagtcaatgtctgctgcactatggtggaccc 500

                                                                       
Query: 301 aaggaagaggtactggggagacagacccagtgtttcctgggaggtagattttactaaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggaagaggtactggggagacagacccagtgtttcctgggaggtagattttactaaggt 560

                                                                       
Query: 361 aagacctggaaaatatgggtataaataccttctagtttttgtggctatgttctccagatg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 aagacctggaaaatatgggtataaataccttctagtttttgtggctatgttctccagacg 620

                                                                       
Query: 421 ggtagaagcttttccctgtttaaaaaaa-a---atattagactgctcagatggtcgtcaa 476
           |||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||
Sbjct: 621 ggtagaagcttttccctgtttaaaaaaatatatatattagactgctcagatggtcgtcaa 680

                         
Query: 477 gattattgaagaat 490
           ||||||||||||||
Sbjct: 681 gattattgaagaat 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)