BAC Information

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BAC

Clone NameMSMg01-116I15
Chromosome12 (Build37)
Map Location 16,980,465 - 16,980,705
singlet/doubletsinglet
Overlap geneRock2
Upstream geneLpin1, Ntsr2, Greb1, E2f6
Downstream genePqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116I15.T7 (MSMg01no116_i15.b1)MSMg01-116I15.TJ (MSMg01no116_i15.g1)
ACCAG327895AG327896
length726729
length of high quality
(start - end)
241 (75 - 315)---
definitionCHROMAT_FILE: MSMg01no116_i15.b1 PHD_FILE: MSMg01no116_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:49 2005CHROMAT_FILE: MSMg01no116_i15.g1 PHD_FILE: MSMg01no116_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAGGCGACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGG
ATCCGCGGAATTCTCCATTTCCTTAATTTGTCTTTCTTTAAAATGATAAC
ATTTAACTAACATCCACTCACTCCAACATGCTGTTTAGATGCAGTAAAAA
ATAAACTGCTGCATGAACTATAATTCACCTTTAAGGCATTTTTCAAAGAG
CTTGTGATTATATTTGCTAGATTGTTTGATTTTTGCCAATTTTCCAGAAA
CAAAGCACTATGTTCTATATCCTTGAAAGTGCATGGCTTCTTCTATTTTT
CAGACATTTCTGTAGTCCTATATCATTAGTGACAGAATATAAAAATACAT
GACCCGCTTCCTACAATGTACTCGCCCCCCCACGACCACGGTGTACTAAT
CCTTCATAGAACCACATGCTACAATTTGACAAGATTTTCACTCTGAAAAT
GCTCATACCAGATAAGCTTGACCACATCAATTTTTCTTCTAAACTCCCTG
ATCTCTGCCCACATCTTTCACCTTTGCCCACATCATACTAACAATTCCTG
AAGTCGCGACATACCACTACTCACATTCCATTTCTACTCCTACCTTACTC
AAACATCTCATTCCCTTATCCTTCCTACCCTTTCCATATCTATACTTACT
TACTCCTATTCATCCATCCCCCTTTCTCCCATCCTCCACTAGATTCCCTT
TTCCCTAATCTCCATTTCATAATACT
ATTAACGGTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCCCACGGCCACT
TCACATGTCATGCGGTGGCAGGCCCTCAGTACCTACTTACGTGGGCCAGG
CCAATGAAGAAAGGAGACGGATGCAATAACATCCCTGCTCCTTCATGGGG
TGCGGGGGCGGGTGCACGTGGGCACAGTGTCACAGTACAGAGATCCTAGC
CGGACGGAGAAGTGGCTCTTAAACTGGAAACAAGCAGGTTGAGATCTTGG
CCTGAATGTAATTGACAGACGGCAGTGGCTTCTTTCCCTAGGGACAGAAG
GGGGTTAGAAGCCCACAAAGTTTTTTTTTACCCCCCCCCGCTCTAAGAGT
TGAATATTACCTATCTGGCACGGTCTAGAGATGTTAGAAATTGTGCCTAT
AAAGTGGGTTCCTTTTTCAGGATTTCTACGATCCATCTATTCCTTTGCGT
TGCCTTTATTCCATAACTGTGACTCCTTGTCTGTCTGGTATACATTATTC
CCATCCGTGCCATGCACCCTGGTTTATAGGTATTCTGTCCTCTGCCTGTT
TTTTGTACATAATATGACATCGTTTATCTCTGCATTATATTTTTCTTGTT
TTTGTTTCTTTTTTTTAATCATCCGTTTTTAAATACCTCTTTTTTTCTAT
TTTTTCTATTTATCCCTTATTCATCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_i15.b1 MSMg01no116_i15.b1 CHROMAT_FILE:
MSMg01no116_i15.b1 PHD_FILE: MSMg01no116_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:49 2005
         (241 letters)



>mm_chr12_16980265_16980905
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttgtctttctttaaaatgataacatttaactaacatccactcactccaacatgctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttgtctttctttaaaatgataacatttaactaacatccactcactccaacatgctgt 260

                                                                       
Query: 61  ttagatgcagtaaaaaataaactgctgcatgaactataattcacctttaaggcatttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagatgcagtaaaaaataaactgctgcatgaactataattcacctttaaggcatttttc 320

                                                                       
Query: 121 aaagagcttgtgattatatttgctagattgtttgatttttgccaattttccagaaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagagcttgtgattatatttgctagattgtttgatttttgccaattttccagaaacaaa 380

                                                                       
Query: 181 gcactatgttctatatccttgaaagtgcatggcttcttctatttttcagacatttctgta 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gcactatgttctatatccttgaaagtgcatggcttcatctatttttcagacatttctgta 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)