BAC Information

Click to search

BAC

Clone NameMSMg01-116L03
Chromosome12 (Build37)
Map Location 9,941,629 - 9,941,911
singlet/doubletsinglet
Overlap genenone
Upstream geneLaptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238, Osr1
Downstream geneLOC382567, Nt5c1b, Rdh14, LOC238074, LOC100042308, EG668435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116L03.T7 (MSMg01no116_l03.b1)MSMg01-116L03.TJ (MSMg01no116_l03.g1)
ACCAG328012AG328013
length707705
length of high quality
(start - end)
646 (55 - 700)284 (82 - 365)
definitionCHROMAT_FILE: MSMg01no116_l03.b1 PHD_FILE: MSMg01no116_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:01 2005CHROMAT_FILE: MSMg01no116_l03.g1 PHD_FILE: MSMg01no116_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATACCTATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTTATCTTCCCATGACTATTATTATGAAGGGGTGTT
GGATTTTGTCAAATGCTTTTTCAGCATCTAACAATATGATCATGTGGTTT
TTTTCTTTGAATTTGTTTATATAGAGGAGTACATTGATGGATTTCTGTAT
ATTAAACCATACCTGCATCCCTAGGATGAATCCTACTTGGTCATGATGGA
TGATCGTTTTGATGTGTGTGCTGGCTAGTTTTATGTCAACTTGATACAGC
TGGAGTTATCACCAAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATCAG
ATCCAACTGTAAGGCATTTTCTCAATTACTGATCAAGGGGGAAATGCCCC
TTGTGGGTGGGACCATCTCTGTGCTGGTAGTCTTGGTTCTATAAGAGAGC
AGGTTGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACATCCCCTCCATG
GCATCTGCATCAGCTCCTGCTTTTTGACCTGCTTGAGTTCCAGTCCTGAC
TTCCTTTAGTGACGAACAGCACTTTGGAAATGTAAGATGAATAAAGCCTT
TCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAATCC
CTGACTAAGATAAATTGTTCTTGGATTTAGTTTGCAAGTACTTTATTGAG
TAATTTG
CCCCCCCGCGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATAAACATTGTAAGGT
TTCTCGTGAACTATTATGGGTGACTAGACCAATGCCTTCTGATGACATGC
TATGAAAATGTTACATGTAACAATCATTTCCAACAGTGGTGATGGCTATT
TAGATGTACAGACAGGCTCTTTAGAGGATAGTTTTAGGATCCTGGACTAG
TTCATCTTCCCTAACTGCCTTGGTCTGCCACAAATTCCTCATATGGCCTG
GGATCTTTTATTCTTGCTTTCTTGGTATCAGGTTCTTCTTGTGAGATGAA
ACAAGTAGGAAGAGAAGTATACCAACACTCAGCCCTCTTTTTCCTTTTTA
ATTTACACTTAGTTCATTGCCATTTGATTGAATGTTATGGTTCATCATTC
TGTAAAATAACCACACAAAATTGACATCTACTCCAGCGAACCCAGGGGTC
TCCCTAAATGATGGTGAGAACCCCTTTAGGTGATAACCCATGAACCCCTC
CTTCATGGATACCACTAATCTTGTGGCTTTGAAAAGCCCCAGTTGTATGG
CCATGGAGCTGCGAAGATTTTCCTTGTATTTCAAGCACCGCTTTTGCATA
AAGGCTATGGGAGTTCATTCCAAGGAGGCATCTGGAAAGCATGTACCATG
ACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_l03.g1 MSMg01no116_l03.g1 CHROMAT_FILE:
MSMg01no116_l03.g1 PHD_FILE: MSMg01no116_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:01 2005
         (284 letters)



>mm_chr12_9941429_9942111
          Length = 683

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaataaacattgtaaggtttctcgtgaactattatgggtgactagaccaatgccttctg 60
           |||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||
Sbjct: 483 caaataaacattgtaaggtttctcatgaactattatgggtgactaga-gaatgccttctg 425

                                                                       
Query: 61  atgacatgctatgaaaatgttacatgtaacaatcatttccaacagtggtgatggctattt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 424 atgacatgctatgaaaatgttacatgtaacaatcgtttccaacagtggtgatggctattt 365

                                                                       
Query: 121 agatgtacagacaggctctttagaggatagttttaggatcctggactagttcatcttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agatgtacagacaggctctttagaggatagttttaggatcctggactagttcatcttccc 305

                                                                       
Query: 181 taactgccttggtctgccacaaattcctcatatggcctgggatcttttattcttgctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 taactgccttggtctgccacaaattcctcatatggcctgggatcttttattcttgctttc 245

                                                       
Query: 241 ttggtatcaggttcttcttgtgagatgaaacaagtaggaagaga 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttggtatcaggttcttcttgtgagatgaaacaagtaggaagaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 683
Length adjustment: 9
Effective length of query: 275
Effective length of database: 674
Effective search space:   185350
Effective search space used:   185350
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)