Query= MSMg01no118_a04.b1 MSMg01no118_a04.b1 CHROMAT_FILE:
MSMg01no118_a04.b1 PHD_FILE: MSMg01no118_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:44 2005
(408 letters)
>mm_chr12_32139599_32140407
Length = 809
Score = 723 bits (374), Expect = 0.0
Identities = 398/408 (97%), Gaps = 5/408 (1%)
Strand = Plus / Minus
Query: 4 ggaattctgaagttt---tcaccttcaggtgctcgggcactggagcactgagtccctggt 60
|||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ggaattctgaag--tccatcagcttcaggtgctcgggcactggagcactgagtccctggt 552
Query: 61 catgctgcctctctggacaatttatggttaataaacaaactatgtccttccccgccccac 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 catgctgcctctctggagaatttatggttaataaacaaactatgtccttccccgccccac 492
Query: 121 acacctggtggggtcagtgcgcgaatgcttgatatatttactaaataagtgttatcactc 180
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 491 acacctggcggggtcagtgcgcgaatgcttgatatatttactaaataagtattatcactc 432
Query: 181 aatgatcttaggtttatcatttattttcaaaaccttcctcttctgacaagattctctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatgatcttaggtttatcatttattttcaaaaccttcctcttctgacaagattctctttg 372
Query: 241 atgtttgcatttgtttatatttcttggggtttatgtctctaagacatttaagtgaagttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atgtttgcatttgtttatatttcttggggtttatgtctctaagacatttaagtgaagttc 312
Query: 301 agtcaatcactggaaaactgcaggcaggaagcaacccagagacagccttccccagccttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agtcaatcactggaaaactgcaggcaggaagcaacccagagacagccttccccagccttg 252
Query: 361 tttcccaccgcttcttaaagctaaaaatgattgttttgagtaagtgga 408
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttcccactgcttcttaaagctaaaaatgattgttttgagtaagtgga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space: 319200
Effective search space used: 319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_a04.g1 MSMg01no118_a04.g1 CHROMAT_FILE:
MSMg01no118_a04.g1 PHD_FILE: MSMg01no118_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:44 2005
(255 letters)
>mm_chr12_31983436_31984088
Length = 653
Score = 435 bits (225), Expect = e-126
Identities = 246/253 (97%), Gaps = 2/253 (0%)
Strand = Plus / Plus
Query: 3 tttcgtacaaagaataactagtgtcctcttgtccccccagggagtcgctgtggtggaaag 62
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 203 tttcgtacaaagaataactagtgtcctcttgtccccccagggagtcattgtggtggaaag 262
Query: 63 gcagtacattcaggaccgcattccttcctggacaggacctggcttcgtccgggtgcctga 122
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 263 gcagtacattcaggaccgcattccttcctggacaggacctgggttcgtccgggtgcctga 322
Query: 123 aggggcttatttggagtttttcattgacaacataccgtattccatggagtatgaaatcct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggggcttatttggagtttttcattgacaacataccgtattccatggagtatgaaatcct 382
Query: 183 gattcgatatgagccacaggtgaagaaagccatcaatatgcatcatggtggaggtggggg 242
|||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 383 gattcgctatgagccacaggtgaagaaagccatcaatatgcatcatggtggaag-ggggg 441
Query: 243 ggggggattcaag 255
|||||| ||||||
Sbjct: 442 gggggg-ttcaag 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 653
Length adjustment: 9
Effective length of query: 246
Effective length of database: 644
Effective search space: 158424
Effective search space used: 158424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
