BAC Information

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BAC

Clone NameMSMg01-118B04
Chromosome12 (Build37)
Map Location 78,499,728 - 78,500,171
singlet/doubletsinglet
Overlap geneFut8
Upstream geneHspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
Downstream geneLOC230765, LOC666659, EG626215, Gphn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118B04.T7 (MSMg01no118_b04.b1)MSMg01-118B04.TJ (MSMg01no118_b04.g1)
ACCAG329042AG329043
length716714
length of high quality
(start - end)
447 (46 - 492)309 (78 - 386)
definitionCHROMAT_FILE: MSMg01no118_b04.b1 PHD_FILE: MSMg01no118_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:48 2005CHROMAT_FILE: MSMg01no118_b04.g1 PHD_FILE: MSMg01no118_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCTTCAGCTTTTGGCGTATTCAACATCTTATTGTAAAAGTTCCCCAG
AAGTTAGAAGTGATACTACAATTCTAAAACTGATTATGTCATACATATGT
TTTAATGAAAAATCTTAAATCATACTCTCACATGCCCTGTGATCAGTTAA
AGCAGAATGATCTCACTACAATGCTGAGAAGATTTTAACAGTTAAATTGA
CATTTGAACCAAGACCCTTAAAGAAATCGCAAAAAACATTCATTGTGAAT
CCAAACAATGTGACTACTTCATAAAATAGAAAATGCAAGTAGAAAGTAGA
GTCTCATCATACCAAGAACCAGGAAAAATCTCAATTTAAATGATGAATGA
TAATCAGCAGACACCACAAGAGACAGCATAGGTGTTGGAATTGTCTTACA
AAGATTTTACAAAAACTGTAATACTACAAACTCTCCAGTAGCAATTAGAG
GCTTTAAAGAAGTGAAAAAATATAGAAAGCCTCAGTAAAGAAATAGATGA
TAGAACAAAAAATTGAGTGGAAATGTTAATAGTGAAAACACAGTGACTTC
CAGCGCTCTGTACTATGGCTGCCGCGGAGAAGAGAACTGGCGCACTGGAG
GCTAAGGTAATAAAGTTCAGCCACTTGCCCCGCAGTGAGTGAAGACCACA
AGGGTCAGCTAGACCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGCAAAAGTACAGTTATAAA
GTAGCAGGGAAATAATTTCATGGTTGGGGGTCAGCACAACGCGAGGAACT
GTATTAAAGGGTCCCAGCATTAGGGAGGTAGAGAAGCACTGACCTACAGG
CAATCTGGGTAAGTTTGTTGCGGTTGTGAGTGAGATGCTTACACAGCTCT
TACTAGCGCTGTTCTAAGCAGCAAGAATACACCTGTGAACACATCAGACA
AAAATCTCCACTGCTGCCATGGAGTTTCGGTCCTTGAAGAAGAAAAATAT
CACTGGGTAAGTATGTGATCTGGTTTGTTAGGCGCAGTACCAACCGCTGT
GATCATAAGGGGACATGAGACGGCTAAGTGGTATTGGGATCAGAGAAGCG
CTGTTTGCTATTTCAAAGTGGCCAGGGAGAGTCTCACTACTGAGACGATC
ATGGCAAAGGCTTTTTTAAGGGGAGGGAGAGAGTCAAGCAGTACGAGAGG
GCATGCTGAAAACAGGTTCAGGATTAGGACACAGCCACGGATTTGATAGC
TGTGACAGTGACGTGCCAGATTGCCCGAGAACGCTACAATAGAATGTGAG
GTCTAAAAAGTAGTCCCAGTATTACCGCACCGGCTGTGCCTCGCCCCCTT
CGACGACATTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_b04.b1 MSMg01no118_b04.b1 CHROMAT_FILE:
MSMg01no118_b04.b1 PHD_FILE: MSMg01no118_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:48 2005
         (447 letters)



>mm_chr12_78499525_78500371
          Length = 847

 Score =  820 bits (424), Expect = 0.0
 Identities = 439/444 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcagcttttggcgtattcaacatcttattgtaaaagttccccagaagttaga 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcagcttttggtgtattcaacatcttattgtaaaagttccccagaagttaga 263

                                                                       
Query: 64  agtgatactacaattctaaaactgattatgtcatacatatgttttaatgaaaaatcttaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgatactacaattctaaaactgattatgtcatacatatgttttaatgaaaaatcttaa 323

                                                                       
Query: 124 atcatactctcacatgccctgtgatcagttaaagcagaatgatctcactacaatgctgag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 atcatactctcacatgccctgtgatcagttaaagcagaatgatctcactacaatgctgaa 383

                                                                       
Query: 184 aagattttaacagttaaattgacatttgaaccaagacccttaaagaaatcgcaaaaaaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagattttaacagttaaattgacatttgaaccaagacccttaaagaaatcgcaaaaaaca 443

                                                                       
Query: 244 ttcattgtgaatccaaacaatgtgactacttcataaaatagaaaatgcaagtagaaagta 303
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 ttcattgtgaatccaaacaatgtgactacttcataaaatagaaaatgcaaatagaaagta 503

                                                                       
Query: 304 gagtctcatcataccaagaaccaggaaaaatctcaatttaaatgatgaatgataatcagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagtctcatcataccaagaaccaggaaaaatctcaatttaaatgatgaatgataatcagc 563

                                                                       
Query: 364 agacaccacaagagacagcataggtgttggaattgtcttacaaagattttacaaaaactg 423
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 564 agacaccacaagagacagcacaggtgttggaattgtcttataaagattttacaaaaactg 623

                                   
Query: 424 taatactacaaactctccagtagc 447
           ||||||||||||||||||||||||
Sbjct: 624 taatactacaaactctccagtagc 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)