BAC Information

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BAC

Clone NameMSMg01-118F15
Chromosome12 (Build37)
Map Location 68,893,528 - 68,893,799
singlet/doubletsinglet
Overlap genenone
Upstream geneMdga2, LOC100040745
Downstream geneLOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118F15.T7 (MSMg01no118_f15.b1)MSMg01-118F15.TJ (MSMg01no118_f15.g1)
ACCAG329247AG329248
length731716
length of high quality
(start - end)
273 (87 - 359)420 (73 - 492)
definitionCHROMAT_FILE: MSMg01no118_f15.b1 PHD_FILE: MSMg01no118_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:10 2005CHROMAT_FILE: MSMg01no118_f15.g1 PHD_FILE: MSMg01no118_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACAACNNNAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCC
AAGAGGATCCGCGGAATTCAATGTTTGCAGAAAACTGAAATGACTGTAAC
TTTTTTTGTTTAATTTCTCAAATGACTCTCTCCCCCCCAGCCATCAAACA
GCAATTTTACAATTGGAAAAGAAAAAAGAAAAATATGTAAAGTAAAAATC
ATGCTTATAAACCTTTTAACATTGTGTTATTTGTGATAAAGTCTACAACT
GATTAACTCTGAAAAACAAGCTGTATGTTGCTTATAAGTTAATAAGAAAG
TTTGCTAGTATGAACAATTTCTGATGGTCATTTACCATGATCCAGTGTCA
TTTGCACTGGCCAAATAGAGATCACTTCTGCGTTTTGAAAAAGTTGAGCA
TTACAGTTATCAATATCTTGAATCTTGCATTGTTCTTTGATGAACACTGG
TTACAATTGCAAGCTTGCACTTCTGTTGCTTCTGCGACCACAGGGATCAA
GTTTGAAAGTTATTTTTAGCTGTGAAGGGCAAGGCTTGACAGAACATGAT
GTATGTGGAGATCCATGTCACTGTGCCTCACCTCTCTATCTCAGAGACAT
ATCATGCCCCAATGTTCTGATACCTTGAGCACAGAATCCCTGCCAGAATT
TCATTCGACTCTGATCTGACATATCCATTGCCCACTGATAGTTTATCATG
TTCCTTTAACGTAATCTCATTTTCTTATTAA
ATGAATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGTAGAGA
AGCACCTGAAAAAATGTCCAACATCTTTAATCATCAGGGAAATGCAAATC
AAAATAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAA
AAATTCACGTGACAGCAGATGCTGGCAGGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA
GTCTGGTGGTTCCTTATAAAATTTGACATAGTACTACCAGAGGACCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACAGGTAAGAAGG
ACACATGTTTCACTATGTTCATAGCAGCCTTATTTATAGTAGCCACAAGC
TGGGAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTATGCAAATGGTCGGACCTGCAGGGTATCATCCTGAGTGAG
GTAACCCAACCACAAAGTAACTCCCACTATATGCACTCACTGACAAGCGG
ATGTTAGCCCCCAACTTAGGATACTCCAGACATAACATCAAATTTGCTAT
ATGCATGAAACTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_f15.b1 MSMg01no118_f15.b1 CHROMAT_FILE:
MSMg01no118_f15.b1 PHD_FILE: MSMg01no118_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:10 2005
         (273 letters)



>mm_chr12_68893328_68893999
          Length = 672

 Score =  497 bits (257), Expect = e-145
 Identities = 269/273 (98%), Gaps = 1/273 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaatgactgtaactttttttgtttaatttctcaaatgactctctcccccccagccatca 60
           |||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 472 gaaatgactgtaac-ttttttgtttaatttctcaaatgactctctccctttcagccatca 414

                                                                       
Query: 61  aacagcaattttacaattggaaaagaaaaaagaaaaatatgtaaagtaaaaatcatgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aacagcaattttacaattggaaaagaaaaaagaaaaatatgtaaagtaaaaatcatgctt 354

                                                                       
Query: 121 ataaaccttttaacattgtgttatttgtgataaagtctacaactgattaactctgaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ataaaccttttaacattgtgttatttgtgataaagtctacaactgattaactctgaaaaa 294

                                                                       
Query: 181 caagctgtatgttgcttataagttaataagaaagtttgctagtatgaacaatttctgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 caagctgtatgttgcttataagttaataagaaagtttgctagtatgaacaatttctgatg 234

                                            
Query: 241 gtcatttaccatgatccagtgtcatttgcactg 273
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gtcatttaccatgatccagtgtcatttgcactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 672
Length adjustment: 9
Effective length of query: 264
Effective length of database: 663
Effective search space:   175032
Effective search space used:   175032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)