BAC Information

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BAC

Clone NameMSMg01-118G10
Chromosome12 (Build37)
Map Location 46,122,492 - 46,122,811
singlet/doubletsinglet
Overlap geneStxbp6
Upstream geneLOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118G10.T7 (MSMg01no118_g10.b1)MSMg01-118G10.TJ (MSMg01no118_g10.g1)
ACCAG329284AG329285
length6771,072
length of high quality
(start - end)
325 (20 - 344)---
definitionCHROMAT_FILE: MSMg01no118_g10.b1 PHD_FILE: MSMg01no118_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:14 2005CHROMAT_FILE: MSMg01no118_g10.g1 PHD_FILE: MSMg01no118_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTTCCAGAGGATCCGCGGAATTCAGATGTGTTTCCGGATTTAA
GACAGCAACGCAGTACCCCATTTACGCCCTGAAGTTCTCCATTGTACATT
AACATTCCCAGTATGACACTGAAAACATACACCTTCAAGTACATTAGAAA
GTGCTGGAAAGAAAAAAAAAAGAATAAAGGGGAAAAAAAAATGACACTTG
ACCCTAGAATGAAAACGATCCTCTCTCCCAGTTGTGATTTTCAAGGAAGA
ATAACTCCTGATGCCTCAATCTTGTGCCTGTATCTTTATAGATGAGACTG
CGTATTTGTGTGTATCTATACATGAAAATAAGTGAGACTTCGCTAAGTAC
AGCTGAATATTATTCTTCCAAATATCTTCTGCTCTGCCTGCGCACATTCA
TTCAATTTTTACAGTTCAAAGACTATCTCATTATTCATATCATCATAGGA
GTTAATAAGAATCTGCCACGTTTAAGATTAGTGAAGCCTATTGAGGCATT
GGAATGCATGATCTGCACATATTAACCTATTTAAAAATCATAACTGATTG
TGCTCACTGAACCACCTCAATGGCCTGGCATTGAAACGGGTGATGGGGCC
TGTTATCCACCACTTGTCAGACTGAGAACGTGGTCTTAATTTACCAACAC
CACGTAACATATAGTCGGGGACTTCCC
TTTTTTATTTTTATTTTTTATNTTTNNNATTAATCATNATTTTTATATCA
AATTAAATTATTTTTAAATATTATTAAATTATTCATATTAATATATATAA
TATATTAAANANNTNAAAAACCAAAACAAAAATAATAAAACACAAACATA
TCATACAAAACACTACAATTATTATTATACTATATCCCTTCTACTATTCA
CACCTTAAACACTCCTCATCTTATCTACTTATCCTCAAAGCTGCATCCCA
CTTCATCCTCATAACTCCAAATTTCCACACAACTACCCCCTTATTATACC
AAATACATAACAATCCATAACACACAAACCTCCTTCTCGTCACTTGTACA
TTCCCTTCTTATCGTATCTTTCTATATCCGTCTTCTACATCTTCGTTGCG
GTTTTTTCACGAACTTGCTATGCCGGTGATGTGAGAGTGTTGAGCGAAGA
CCTATAAAGAGATAGACACACACCAATATCTAGTGAAACACGAGTATGAA
GCAGAAGATACTCACGCCGTCATCGAGGTGCTGTCGAGGACCCTTTTTTT
CCGCGGCCGCCAAGGGCTGTAATGTATTTGTTCATGCATTGCATGATACT
TGCCTAAGGCGCGGTTAGTAGCGGGTGACACGCAGTCGTGCGAGTGGCGG
AGCTAAGCGCAGCTGGTCGAAAGATTCTTGTACGAACTGTTTTGGCGGGT
AACACGGGAGACGGTGAGAAACGCGGACGGGGAAAATGGTGAGCTCGACG
AGACGGCGGGAGATATGTACGTAGACGCGTGCGATGCATGGTGAAGATAC
GTGGCGTTCGTAGTTGGATGCTGCTGCGTTGGTCATTGGTGACGATAGCT
AGCGTAAGTGATCGTTACACCGGATGTTTGGTATACTTCTCCGAGAACTA
GATCGGGTGGAGGTGTGAGACGCTATGTCGATGCGATCGAGGCAGGCACG
GTGCGGATGCGCATCTATACATATAGCAGTATATACCACCGCAGCGAACA
CGCGATGTAGCAGAGACCCGAGCGCGTGCACGCCGGGTGTGACACACACA
TTCGTGTTCTCTACGCGCCGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_g10.b1 MSMg01no118_g10.b1 CHROMAT_FILE:
MSMg01no118_g10.b1 PHD_FILE: MSMg01no118_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:14 2005
         (325 letters)



>mm_chr12_46122287_46123011
          Length = 725

 Score =  590 bits (305), Expect = e-173
 Identities = 317/323 (98%), Gaps = 6/323 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcagatgtgtttc--c-ggatttaagacagcaacgcagtaccccatttacgccctg 62
           |||||||||||||   |  | |||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattcagatgtg---caactggatttaagacagcaacgcagtaccccatttacgccctg 469

                                                                       
Query: 63  aagttctccattgtacattaacattcccagtatgacactgaaaacatacaccttcaagta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aagttctccattgtacattaacattcccagtatgacactgaaaacatacaccttcaagta 409

                                                                       
Query: 123 cattagaaagtgctggaaagaaaaaaaaaagaataaaggggaaaaaaaaatgacacttga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cattagaaagtgctggaaagaaaaaaaaaagaataaaggggaaaaaaaaatgacacttga 349

                                                                       
Query: 183 ccctagaatgaaaacgatcctctctcccagttgtgattttcaaggaagaataactcctga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ccctagaatgaaaacgatcctctctcccagttgtgattttcaaggaagaataactcctga 289

                                                                       
Query: 243 tgcctcaatcttgtgcctgtatctttatagatgagactgcgtatttgtgtgtatctatac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgcctcaatcttgtgcctgtatctttatagatgagactgcgtatttgtgtgtatctatac 229

                                  
Query: 303 atgaaaataagtgagacttcgct 325
           |||||||||||||||||||||||
Sbjct: 228 atgaaaataagtgagacttcgct 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)